General information for g1327.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1327 is located on chr_3: 9725163..9742728 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1327 | g1327.t6 | isoform | g1327.t6 | 9722435 | 9725787 |
| chr_3 | g1327 | g1327.t6 | exon | g1327.t6.exon1 | 9722435 | 9722438 |
| chr_3 | g1327 | g1327.t6 | exon | g1327.t6.exon2 | 9723774 | 9723913 |
| chr_3 | g1327 | g1327.t6 | cds | g1327.t6.CDS1 | 9723858 | 9723913 |
| chr_3 | g1327 | g1327.t6 | exon | g1327.t6.exon3 | 9725154 | 9725787 |
| chr_3 | g1327 | g1327.t6 | cds | g1327.t6.CDS2 | 9725154 | 9725469 |
| chr_3 | g1327 | g1327.t6 | TSS | g1327.t6 | NA | NA |
| chr_3 | g1327 | g1327.t6 | TTS | g1327.t6 | NA | NA |
Sequences
>g1327.t6 Gene=g1327 Length=778
ACAGGAATTACATCAAGGAACTAATCAAAAGGAACTCATACAGATTGCCGAATACTATTT
CGATGGTCAAGGTAAAGCACTCCGTCCTATGGTGACACTATTGATGGGAAAAGCAATAAA
TTATCACATGTACAGAGAAAACAATCCACGTACAGTTGATGCTCAAAGAAAGATTGCCAT
GATAGCAGAAATGATTCACTCAGCAAGTTTAATTCACGATGATGTCATCGATCAATCATT
CTCTAGAAGAGGAAAACCAAGCGTGAACGTTCTATGGAACCATAAAAAAGTGAGTAAAAA
TCTTATTACTTACTTATTATGTCTTGTCAATTTCAAGTGCAATTTTAATGACATAAAAAC
TCAAATCTTTAATTTACCCTTAATTGAATATGTCTGCGTGCACATTAAGCTGCAAAAGTT
TCACTTCTCTCTTTTTTTAAAGTTGATCAACAACAAGTAAACGGTAGTATCATAATATGC
ATTTCTATGCCAAGGTAGAACAGCGATCAACTAAAAAGAGATCGCAACATGGAATGTCGT
ATATTTATACCTATATGCGCATTCACCAGTGCTTACCGTCTATTTGCAAAGTGCATATAT
GCGAGAATATTGCGTAATCACTAATAGCATAGTCGCATAACAAATGACTCGCAATTTGTA
TGCACACTTCTTTATTTTATTATTATTTACTGCAAACAAACCCACCTGATGGACTTTCAA
TCAAAAGTCTACTTTTTATGGCATTGTGTGTGTGCAACTATGTGAGATGCATTGCAAA
>g1327.t6 Gene=g1327 Length=123
MVTLLMGKAINYHMYRENNPRTVDAQRKIAMIAEMIHSASLIHDDVIDQSFSRRGKPSVN
VLWNHKKVSKNLITYLLCLVNFKCNFNDIKTQIFNLPLIEYVCVHIKLQKFHFSLFLKLI
NNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1327.t6 | Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 1 | 77 | 1.1E-19 |
| 2 | g1327.t6 | PANTHER | PTHR12001:SF69 | DECAPRENYL-DIPHOSPHATE SYNTHASE SUBUNIT 1 | 1 | 66 | 6.6E-18 |
| 3 | g1327.t6 | PANTHER | PTHR12001 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE | 1 | 66 | 6.6E-18 |
| 1 | g1327.t6 | Pfam | PF00348 | Polyprenyl synthetase | 2 | 70 | 3.0E-16 |
| 5 | g1327.t6 | ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 41 | 55 | - |
| 4 | g1327.t6 | SUPERFAMILY | SSF48576 | Terpenoid synthases | 4 | 72 | 1.71E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008299 | isoprenoid biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed