General information for g13276.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Deoxynucleoside kinase.
Parent gene
- The parent gene g13276 is located on chr_1: 28883028..28883678 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13276 | g13276.t1 | isoform | g13276.t1 | 28883028 | 28883678 |
| chr_1 | g13276 | g13276.t1 | exon | g13276.t1.exon1 | 28883028 | 28883678 |
| chr_1 | g13276 | g13276.t1 | cds | g13276.t1.CDS1 | 28883028 | 28883678 |
| chr_1 | g13276 | g13276.t1 | TTS | g13276.t1 | 28883717 | 28883717 |
| chr_1 | g13276 | g13276.t1 | TSS | g13276.t1 | NA | NA |
Sequences
>g13276.t1 Gene=g13276 Length=651
ATGAGCAAAGAAACTCCATTTACAGTTTTTATTGAAGGAAATATTGGAAGTGGAAAGACA
ACTTTTTTGAAACATTTTAGTAAATTTGAAAATGTTTCTTTGGTATTTGAGCCAGTTGGG
CTTTGGCAAAATTTAAATGGATACAATTTGTTAGAGTTGCAGTATGAGGATCCCGAAAAA
TGGCATATGTCATTACAAAGTTATGTAATGTTGACAGTGCTTAGAAATCATTTAGAAAAT
AAAACTGATAAACCAATTAAAATAATGGAGAGATCACTTTATTGTGGACAATTTTGTTAT
GTTGAGCAAATGTTTGCAAATAAAACTTTAGAACCTGCCAAGTATTATGTGCTACAGGAA
TGGTATAATTTTATACATGAACGACATAAAAGTCAGTGTGATCTGATCATTTATTTAAGA
ACCAATCCAGAAAATGCTTTAAAACGTATAAGAAAACGAGGCAGAACTGAGGAAAGCGGT
ATAACGATTGAATATTTAAGAGAGTTGCATAATCATCACGAAAATCGGTTGATTCATGGA
AAATTTTATAGACCTGCACCAGTGCTTGTTATTGACGCGGATTCAGATAAAGAAAACATT
TTAAAAGAATATGAAAAGGCAGAAAAAATTATTTTAAGAGATAAAAATTGA
>g13276.t1 Gene=g13276 Length=216
MSKETPFTVFIEGNIGSGKTTFLKHFSKFENVSLVFEPVGLWQNLNGYNLLELQYEDPEK
WHMSLQSYVMLTVLRNHLENKTDKPIKIMERSLYCGQFCYVEQMFANKTLEPAKYYVLQE
WYNFIHERHKSQCDLIIYLRTNPENALKRIRKRGRTEESGITIEYLRELHNHHENRLIHG
KFYRPAPVLVIDADSDKENILKEYEKAEKIILRDKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g13276.t1 | CDD | cd01673 | dNK | 11 | 196 | 0 |
| 5 | g13276.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 0 |
| 2 | g13276.t1 | PANTHER | PTHR10513:SF24 | THYMIDINE KINASE 2, MITOCHONDRIAL | 3 | 206 | 0 |
| 3 | g13276.t1 | PANTHER | PTHR10513 | DEOXYNUCLEOSIDE KINASE | 3 | 206 | 0 |
| 6 | g13276.t1 | PIRSF | PIRSF000705 | DNK | 1 | 216 | 0 |
| 1 | g13276.t1 | Pfam | PF01712 | Deoxynucleoside kinase | 10 | 211 | 0 |
| 4 | g13276.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 4 | 212 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0019136 | deoxynucleoside kinase activity | MF |
| GO:0005524 | ATP binding | MF |
| GO:0006139 | nucleobase-containing compound metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed