Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_1 | g13300 | g13300.t18 | isoform | g13300.t18 | 29007914 | 29009204 |
chr_1 | g13300 | g13300.t18 | exon | g13300.t18.exon1 | 29007914 | 29007941 |
chr_1 | g13300 | g13300.t18 | exon | g13300.t18.exon2 | 29008121 | 29008228 |
chr_1 | g13300 | g13300.t18 | cds | g13300.t18.CDS1 | 29008145 | 29008228 |
chr_1 | g13300 | g13300.t18 | exon | g13300.t18.exon3 | 29008310 | 29008530 |
chr_1 | g13300 | g13300.t18 | cds | g13300.t18.CDS2 | 29008310 | 29008530 |
chr_1 | g13300 | g13300.t18 | exon | g13300.t18.exon4 | 29008591 | 29008906 |
chr_1 | g13300 | g13300.t18 | cds | g13300.t18.CDS3 | 29008591 | 29008906 |
chr_1 | g13300 | g13300.t18 | exon | g13300.t18.exon5 | 29008971 | 29009004 |
chr_1 | g13300 | g13300.t18 | cds | g13300.t18.CDS4 | 29008971 | 29009004 |
chr_1 | g13300 | g13300.t18 | exon | g13300.t18.exon6 | 29009056 | 29009204 |
chr_1 | g13300 | g13300.t18 | cds | g13300.t18.CDS5 | 29009056 | 29009204 |
chr_1 | g13300 | g13300.t18 | TTS | g13300.t18 | 29009276 | 29009276 |
chr_1 | g13300 | g13300.t18 | TSS | g13300.t18 | NA | NA |
>g13300.t18 Gene=g13300 Length=856
ACTATTATATTTCTTTCTGTTTTTTGTGATCACTCTCTGATAATAATAATTCATGACAAT
ACTACACAAGCTAACTTTAAATCTCATTTTCACAGTCTTCGTTGTGAGTGCATTGAGAAT
TGTCGAACAATTAGATGATTATGACGGCACGTTGGCTGCCATTCAACCACATCCAAATAT
GACATACATGACTGAATATACCAAAGAAGCGCTATTGAACATCTCATCTTACCCCAACGT
GTATTTAGCAGTTATATCCGGAAGGGGAGTTGATGATGTGAAGACAAAAGTTGGTATCGA
TGGAATTGTTTATGCTGGAAATCATGGTCTCGAAATTTTATATCCTAATGGAACTCGTTA
CATACACGAAGTTCCAAGTGATGTTAAAGCAAATTTTACAAAAATGGTGGAAGCTTTAGA
AAATCTTAAAAGAGACGGAAGTTGGGTCGAAAATAAGAAATTCTCAGTAACTTTTCACTT
TAGAGCTGTGCCTGAAAAAGATCATGAGAAAATCAACAATGAAGCTAAGGAAATTATCGA
GAAATTTGGATATCGAGCAAATCCAGCTCATTGCGCTATTGAAGCAAAACCACCGGTAGT
ATGGCATAAGGGCAAGGCAGCCGAATATATTTTAAATCACTCATTTGGTAAAGATTGGAG
AGAAAAAATTCAAGTTGTGTTTGCTGGCGATGATACAACCGATGAAGATGTTTTCGAGTT
ACTTCAAGGAATTGGTGTTACTTTTAGAGTCACAAAGGATCCAAACATTGTGACTAAAGC
AACTTACAAAGTGCCATCAACTGAAGCTGTTACAAAGGTTCTACAATGGGTCGATAAAAA
ATTTGGAAATAAATAA
>g13300.t18 Gene=g13300 Length=267
MTILHKLTLNLIFTVFVVSALRIVEQLDDYDGTLAAIQPHPNMTYMTEYTKEALLNISSY
PNVYLAVISGRGVDDVKTKVGIDGIVYAGNHGLEILYPNGTRYIHEVPSDVKANFTKMVE
ALENLKRDGSWVENKKFSVTFHFRAVPEKDHEKINNEAKEIIEKFGYRANPAHCAIEAKP
PVVWHKGKAAEYILNHSFGKDWREKIQVVFAGDDTTDEDVFELLQGIGVTFRVTKDPNIV
TKATYKVPSTEAVTKVLQWVDKKFGNK
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
13 | g13300.t18 | CDD | cd01627 | HAD_TPP | 29 | 253 | 1.17838E-56 |
6 | g13300.t18 | Gene3D | G3DSA:3.40.50.1000 | - | 29 | 247 | 7.6E-39 |
7 | g13300.t18 | Gene3D | G3DSA:3.30.70.1020 | - | 108 | 181 | 7.6E-39 |
2 | g13300.t18 | PANTHER | PTHR43768 | TREHALOSE 6-PHOSPHATE PHOSPHATASE | 29 | 258 | 2.8E-46 |
3 | g13300.t18 | PANTHER | PTHR43768:SF3 | TREHALOSE 6-PHOSPHATE PHOSPHATASE | 29 | 258 | 2.8E-46 |
1 | g13300.t18 | Pfam | PF02358 | Trehalose-phosphatase | 29 | 247 | 9.5E-39 |
9 | g13300.t18 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
10 | g13300.t18 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
11 | g13300.t18 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 18 | - |
12 | g13300.t18 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 19 | 22 | - |
8 | g13300.t18 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 267 | - |
4 | g13300.t18 | SUPERFAMILY | SSF56784 | HAD-like | 29 | 260 | 2.17E-34 |
5 | g13300.t18 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
16 | g13300.t18 | TIGRFAM | TIGR00685 | T6PP: trehalose-phosphatase | 27 | 260 | 4.4E-41 |
15 | g13300.t18 | TIGRFAM | TIGR01484 | HAD-SF-IIB: HAD hydrolase, family IIB | 29 | 229 | 4.1E-19 |
14 | g13300.t18 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 24 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0005992 | trehalose biosynthetic process | BP |
GO:0003824 | catalytic activity | MF |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.