Gene loci information

Transcript annotation

  • This transcript has been annotated as Trehalose-6-phosphate phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13300 g13300.t39 isoform g13300.t39 29007929 29009204
chr_1 g13300 g13300.t39 exon g13300.t39.exon1 29007929 29007941
chr_1 g13300 g13300.t39 exon g13300.t39.exon2 29008121 29008450
chr_1 g13300 g13300.t39 exon g13300.t39.exon3 29008612 29009204
chr_1 g13300 g13300.t39 cds g13300.t39.CDS1 29008637 29008990
chr_1 g13300 g13300.t39 TTS g13300.t39 29009276 29009276
chr_1 g13300 g13300.t39 TSS g13300.t39 NA NA

Sequences

>g13300.t39 Gene=g13300 Length=936
TCTGTTTTTTGTGATCACTCTCTGATAATAATAATTCATGACAATACTACACAAGCTAAC
TTTAAATCTCATTTTCACAGTCTTCGTTGTGAGTGCATTGAGAATTGTCGAACAATTAGA
TTTGAAACTTGAGCCACAAATGGAAGATTTAGAAAAATACTTGGAGGATTATGTGTCGAA
TAAACCATTCGCGTTATTACTCGATTATGACGGCACGTTGGCTGCCATTCAACCACATCC
AAATATGACATACATGACTGAATATACCAAAGAAGCGCTATTGAACATCTCATCTTACCC
CAACGTGTATTTAGCAGTTATATCCGGAAGGGGAGTTGATGATTGATGTTAAAGCAAATT
TTACAAAAATGGTGGAAGCTTTAGAAAATCTTAAAAGAGACGGAAGTTGGGTCGAAAATA
AGAAATTCTCAGTAACTTTTCACTTTAGAGCTGTGCCTGAAAAAGATCATGAGAAAATCA
ACAATGAAGCTAAGGAAATTATCGAGAAATTTGGATATCGAGCAAATCCAGCTCATTGCG
CTATTGAAGCAAAACCACCGGTAGTATGGCATAAGGGCAAGGCAGCCGAATATATTTTAA
ATCACTCATTTGGTAAAGATTGGAGAGAAAAAATTCAAGTGAGAAATAGCATTGAACTTG
TTTGTTTCATTCGTATTGATAAGATATTTTTATTGTGTCTAGGTTGTGTTTGCTGGCGAT
GATACAACCGATGAAGGTAAAGGTTTAAAGTTTATTGATATTTTTTTAGCTAATTGATTA
TTTACAGATGTTTTCGAGTTACTTCAAGGAATTGGTGTTACTTTTAGAGTCACAAAGGAT
CCAAACATTGTGACTAAAGCAACTTACAAAGTGCCATCAACTGAAGCTGTTACAAAGGTT
CTACAATGGGTCGATAAAAAATTTGGAAATAAATAA

>g13300.t39 Gene=g13300 Length=117
MVEALENLKRDGSWVENKKFSVTFHFRAVPEKDHEKINNEAKEIIEKFGYRANPAHCAIE
AKPPVVWHKGKAAEYILNHSFGKDWREKIQVRNSIELVCFIRIDKIFLLCLGCVCWR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g13300.t39 Pfam PF02358 Trehalose-phosphatase 11 84 0.0e+00
g13300.t39 SUPERFAMILY SSF56784 HAD-like 10 80 5.4e-06

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005992 trehalose biosynthetic process BP
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed