General information for g13300.t58
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Trehalose-6-phosphate phosphatase.
Parent gene
- The parent gene g13300 is located on chr_1: 29008579..29009204 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13300 | g13300.t58 | TSS | g13300.t58 | 29008120 | 29008120 |
| chr_1 | g13300 | g13300.t58 | isoform | g13300.t58 | 29008145 | 29009204 |
| chr_1 | g13300 | g13300.t58 | exon | g13300.t58.exon1 | 29008145 | 29008906 |
| chr_1 | g13300 | g13300.t58 | cds | g13300.t58.CDS1 | 29008637 | 29008906 |
| chr_1 | g13300 | g13300.t58 | exon | g13300.t58.exon2 | 29009038 | 29009204 |
| chr_1 | g13300 | g13300.t58 | cds | g13300.t58.CDS2 | 29009038 | 29009121 |
| chr_1 | g13300 | g13300.t58 | TTS | g13300.t58 | 29009276 | 29009276 |
Sequences
>g13300.t58 Gene=g13300 Length=929
ATGACAATACTACACAAGCTAACTTTAAATCTCATTTTCACAGTCTTCGTTGTGAGTGCA
TTGAGAATTGTCGAACAATTAGATTTGAAACTTGAGCCACAAATGGAAGATTTAGAAAAA
TACTTGGAGGATTATGTGTCGAATAAACCATTCGCGTTATTACTCGATTATGACGGCACG
TTGGCTGCCATTCAACCACATCCAAATATGACATACATGACTGAATATACCAAAGAAGCG
CTATTGAACATCTCATCTTACCCCAACGTGTATTTAGCAGTTATATCCGGAAGGGGAGTT
GATGATGTGAAGACAAAAGTTGGTATCGATGGAATTGTTTATGCTGGAAATCATGGTCTC
GAAATTTTATATCCTAATGGAACTCGGTGAGATTTATTTTAAAATTTCCTAATTACATGT
AATTCTTATTTAATATCATTCTATAGTTACATACACGAAGTTCCAAGTGATGTTAAAGCA
AATTTTACAAAAATGGTGGAAGCTTTAGAAAATCTTAAAAGAGACGGAAGTTGGGTCGAA
AATAAGAAATTCTCAGTAACTTTTCACTTTAGAGCTGTGCCTGAAAAAGATCATGAGAAA
ATCAACAATGAAGCTAAGGAAATTATCGAGAAATTTGGATATCGAGCAAATCCAGCTCAT
TGCGCTATTGAAGCAAAACCACCGGTAGTATGGCATAAGGGCAAGGCAGCCGAATATATT
TTAAATCACTCATTTGGTAAAGATTGGAGAGAAAAAATTCAACTAATTGATTATTTACAG
ATGTTTTCGAGTTACTTCAAGGAATTGGTGTTACTTTTAGAGTCACAAAGGATCCAAACA
TTGTGACTAAAGCAACTTACAAAGTGCCATCAACTGAAGCTGTTACAAAGGTTCTACAAT
GGGTCGATAAAAAATTTGGAAATAAATAA
>g13300.t58 Gene=g13300 Length=117
MVEALENLKRDGSWVENKKFSVTFHFRAVPEKDHEKINNEAKEIIEKFGYRANPAHCAIE
AKPPVVWHKGKAAEYILNHSFGKDWREKIQLIDYLQMFSSYFKELVLLLESQRIQTL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g13300.t58 | Pfam | PF02358 | Trehalose-phosphatase | 11 | 84 | 0.0e+00 |
| g13300.t58 | SUPERFAMILY | SSF56784 | HAD-like | 10 | 80 | 5.4e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005992 | trehalose biosynthetic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed