General information for g13302.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Trehalose-6-phosphate synthase beta].
Parent gene
- The parent gene g13302 is located on chr_1: 29013994..29015173 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13302 | g13302.t11 | TTS | g13302.t11 | 29010178 | 29010178 |
| chr_1 | g13302 | g13302.t11 | isoform | g13302.t11 | 29010236 | 29011806 |
| chr_1 | g13302 | g13302.t11 | exon | g13302.t11.exon1 | 29010236 | 29010977 |
| chr_1 | g13302 | g13302.t11 | exon | g13302.t11.exon2 | 29011047 | 29011209 |
| chr_1 | g13302 | g13302.t11 | exon | g13302.t11.exon3 | 29011284 | 29011414 |
| chr_1 | g13302 | g13302.t11 | cds | g13302.t11.CDS1 | 29011404 | 29011414 |
| chr_1 | g13302 | g13302.t11 | exon | g13302.t11.exon4 | 29011479 | 29011806 |
| chr_1 | g13302 | g13302.t11 | cds | g13302.t11.CDS2 | 29011479 | 29011623 |
| chr_1 | g13302 | g13302.t11 | TSS | g13302.t11 | NA | NA |
Sequences
>g13302.t11 Gene=g13302 Length=1364
ATCGGCTATTCACACAAGCTTGCTCTTTTGCTTGATTATGATGGTACATTGGCACCCATT
GCTCCACATCCTGATCTTGCTACGCTTCCACAAGAAACAAAGAATGTTTTGCATCGTTTG
AGCAATTTAAATGAAGTCTATATTGCAGTCATTTCTGGTCGTAGTGTTGAAAATGTTAAA
AACATGGTTGGAATCGAAGGCATCACATATGCCGGTAATCACGGTTTAGAAATTTTGCAT
CCCGATGGAAGTAAGTTCGTTCACCCTATGCCAGTCGAATATGAGGAAAAAGTCAGTAAA
TTATTGAGAGCATTGCAAGATTCGGTAAGTTTGTCATGATGGAGCTTGGGTAGAGAACAA
AGGTGCCCTTTTGACTTTCCATTATCGTGATACACCAAATGAAATGCGTCCACAAATGAT
TGACAAGGCAAAATTTTTGATTGAGCATTTTGGATTCACTGCAAGTGAATCACTATGTGC
TATTGAAGCTAAGCCACCAGTCCCTTGGAATAAAGGACGTGCTTCAATTTATATTCTTCG
TACTGCATTTGGTGTTGATTGGAGTGAGAGAATCAAAATTATTTACGTTGGAGATGACGT
CACTGATGAGGACGCAATGATGTTTAAAGAACATCATTTTTTGAATATTTCCAAAAATGC
TTTCTATACTCTTTATTCTCTCGTATCTAGGCTCTACGAGGCATGGCAGCGACGTTCAGA
ATCGCAAGTTCCAATATTATTAAAACCGCAGCTGAACGCCGTTTGCCCTCCACCGATTCC
GTTCTCACCATGTTAAAATGGATTGAGCGTCATTTTATGAATAAACGTCCACGTAAGATC
TCAAATAATCAGCGACCAAAGAAAGTTTCTTCATTTAACAATAACAATAGTATCGGTTTT
CCTATCCATATGTCATTCGACTTAACCACCTCCCCTTCAAGAAGTCCACGTTCATCTCCA
TTACCAAGCCCATCCTATAGTCAAGAAAGTAGCAGCAGTAACAGTAGCAGCAGCAGTGAA
GAATCATAGAATTTCTTTTTATTTAGTAAATTTTTAATTATCAATAATCTTGATAGGTTC
AATAGAGTTTTTTTAATCGTTCCTAATAATTTTTACAAATTTTCAATGAAATAATTTGAT
GAAATTCTAATATATATAGAATTTTAATGTTATGCCAAAAATTTTTAAAATTAAATAATT
ATTATTGTCTCTTCTTTTCTATTGGACATTCTAGACAATGCATAAAAATATTTTTCAAAA
CGAATTTTATAAATAAGGCAAAAAAACTTAAATTTAAGGAGAAAAAATTTATTTCTGTGA
ATTATAAAATATTTCTTTATTCAAATTTGAAAATAAGTCGCTAT
>g13302.t11 Gene=g13302 Length=51
MVGIEGITYAGNHGLEILHPDGSKFVHPMPVEYEEKVSKLLRALQDSVSLS
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
