General information for g13302.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Trehalose-6-phosphate synthase beta].
Parent gene
- The parent gene g13302 is located on chr_1: 29013994..29015173 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13302 | g13302.t4 | isoform | g13302.t4 | 29009262 | 29011483 |
| chr_1 | g13302 | g13302.t4 | exon | g13302.t4.exon1 | 29009262 | 29009380 |
| chr_1 | g13302 | g13302.t4 | exon | g13302.t4.exon2 | 29009457 | 29009562 |
| chr_1 | g13302 | g13302.t4 | exon | g13302.t4.exon3 | 29009658 | 29009756 |
| chr_1 | g13302 | g13302.t4 | exon | g13302.t4.exon4 | 29009811 | 29011483 |
| chr_1 | g13302 | g13302.t4 | cds | g13302.t4.CDS1 | 29010571 | 29010897 |
| chr_1 | g13302 | g13302.t4 | TSS | g13302.t4 | NA | NA |
| chr_1 | g13302 | g13302.t4 | TTS | g13302.t4 | NA | NA |
Sequences
>g13302.t4 Gene=g13302 Length=1997
GGTAAGTAAAGATGCAATAAAAAGTATTCAAATAAATTTCGATAATGAAAATGTTTTATT
CCGTCATAGGTTTGTCATGATGGAGCTTGGGTAGAGAACAAAGGTGCCCTTTTGACTTTC
CATTATCGTGATACACCAAATGAAATGCGTCCACAAATGATTGACAAGGCAAAATTTTTG
ATTGAGCATTTTGGATTCACGTGAGTCTTTATTTTTGAAAAGAATATTCATTATCATCAT
TACTAATCACTTATTTTTAATTATAAAATTTCAGTGCAAGTGAATCACTATGTGCTATTG
AAGCTAAGCCACCAGTCCCTTGGAATAAAGGACGTGCTTCAATTTATATTCTTCGTACTG
CATTTGGTGTTGATTGGAGTGAGAGAATCAAAATTATTTACGTTGGAGATGACGTCACTG
ATGAGGACGCAATGATGGTAAATTCGAACAAATTTTAAAAAAAAATTCATCTAATTGGAT
TGACTCATTTTTCAAAATTTTTTCAGTTTAAAGAACATCATTTTTTGAATATTTCCAAAA
ATGCTTTCTATACTCTTTATTCTCTCGTATCTAGGCTCTACGAGGCATGGCAGCGACGTT
CAGAATCGCAAGTTCCAATATTATTAAAACCGCAGCTGAACGCCGTTTGCCCTCCACCGA
TTCCGTTCTCACCATGTTAAAATGGATTGAGCGTCATTTTATGAATAAACGTCCACGTAA
GATCTCAAATAATCAGCGACCAAAGAAAGTTTCTTCATTTAACAATAACAATAGTATCGG
TTTTCCTATCCATATGTCATTCGACTTAACCACCTCCCCTTCAAGAAGTCCACGTTCATC
TCCATTACCAAGCCCATCCTATAGTCAAGAAAGTAGCAGCAGTAACAGTAGCAGCAGCAG
TGAAGAATCATAGAATTTCTTTTTATTTAGTAAATTTTTAATTATCAATAATCTTGATAG
GTTCAATAGAGTTTTTTTAATCGTTCCTAATAATTTTTACAAATTTTCAATGAAATAATT
TGATGAAATTCTAATATATATAGAATTTTAATGTTATGCCAAAAATTTTTAAAATTAAAT
AATTATTATTGTCTCTTCTTTTCTATTGGACATTCTAGACAATGCATAAAAATATTTTTC
AAAACGAATTTTATAAATAAGGCAAAAAAACTTAAATTTAAGGAGAAAAAATTTATTTCT
GTGAATTATAAAATATTTCTTTATTCAAATTTGAAAATAAGTCGCTATTAATGTGTATGT
GAAGCGACTAACCAACTTATTATGAAATAAAAAAGAAACATTGGATAAATTGCTAATGCT
TTTCGCTTTGGTGGTTGACTATTTTCCATAAAAATTACAGATGCATATGTAGCCCAAGCA
AAACCAGCTCCTGAAGCGAGCAATCGCAATAGGAAAATGAAAGTCGATTGTGAGAACAAG
ATGAGAAGAATTTTGCAAACTAATAAACTTAATCCTAATGGTGTAAGACAATAGCCAAGC
ACACATACTGATTGAAAGAATGAGATTTGACCACCGAGTAATTTACTATTAATTGTGACA
ACAATTGCTCCTAGCCATACAATCACAAACACCTCAGCAAACTCTGGACCACCATCATTT
TCACCGTTTTCTGATGAACTTTGTAAAATTGTTGCCATGAATGTACAAAGAACGAGTGGT
CCCCATAAGTCCCATTCTTTCAGAATATTGTTCTTGCGTTGAGGATGAAGTACATTCTTG
AATTTTGTGTAAACTGCTCTTACATCCCTGAGTTTCCTTTATCGGTTCGTCAAGTGTATC
AAAATCAGTTCCTTTCATGCCTCTTAATCTTTTACTTCCGCCTGAAATAGTCATCGATCC
AGACAAATCATCAGAAATATCGATTCTTTCATTATCAAAATCCATCTTTAGTTCTGAATA
TTGTGCCTTATTACAACTTAAATTAATTTTATTTACACAGAAGAAATTTAAAGAGATTTT
TTGTTTACGTATTGAGC
>g13302.t4 Gene=g13302 Length=108
MAATFRIASSNIIKTAAERRLPSTDSVLTMLKWIERHFMNKRPRKISNNQRPKKVSSFNN
NNSIGFPIHMSFDLTTSPSRSPRSSPLPSPSYSQESSSSNSSSSSEES
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g13302.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 108 | - |
| g13302.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 108 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
