General information for g13302.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Trehalose-6-phosphate synthase beta].
Parent gene
- The parent gene g13302 is located on chr_1: 29013994..29015173 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13302 | g13302.t9 | TTS | g13302.t9 | 29010178 | 29010178 |
| chr_1 | g13302 | g13302.t9 | isoform | g13302.t9 | 29010236 | 29011485 |
| chr_1 | g13302 | g13302.t9 | exon | g13302.t9.exon1 | 29010236 | 29010977 |
| chr_1 | g13302 | g13302.t9 | cds | g13302.t9.CDS1 | 29010804 | 29010977 |
| chr_1 | g13302 | g13302.t9 | exon | g13302.t9.exon2 | 29011047 | 29011209 |
| chr_1 | g13302 | g13302.t9 | cds | g13302.t9.CDS2 | 29011047 | 29011209 |
| chr_1 | g13302 | g13302.t9 | exon | g13302.t9.exon3 | 29011284 | 29011414 |
| chr_1 | g13302 | g13302.t9 | cds | g13302.t9.CDS3 | 29011284 | 29011339 |
| chr_1 | g13302 | g13302.t9 | exon | g13302.t9.exon4 | 29011483 | 29011485 |
| chr_1 | g13302 | g13302.t9 | TSS | g13302.t9 | NA | NA |
Sequences
>g13302.t9 Gene=g13302 Length=1039
TCGGTTTGTCATGATGGAGCTTGGGTAGAGAACAAAGGTGCCCTTTTGACTTTCCATTAT
CGTGATACACCAAATGAAATGCGTCCACAAATGATTGACAAGGCAAAATTTTTGATTGAG
CATTTTGGATTCACTGCAAGTGAATCACTATGTGCTATTGAAGCTAAGCCACCAGTCCCT
TGGAATAAAGGACGTGCTTCAATTTATATTCTTCGTACTGCATTTGGTGTTGATTGGAGT
GAGAGAATCAAAATTATTTACGTTGGAGATGACGTCACTGATGAGGACGCAATGATGTTT
AAAGAACATCATTTTTTGAATATTTCCAAAAATGCTTTCTATACTCTTTATTCTCTCGTA
TCTAGGCTCTACGAGGCATGGCAGCGACGTTCAGAATCGCAAGTTCCAATATTATTAAAA
CCGCAGCTGAACGCCGTTTGCCCTCCACCGATTCCGTTCTCACCATGTTAAAATGGATTG
AGCGTCATTTTATGAATAAACGTCCACGTAAGATCTCAAATAATCAGCGACCAAAGAAAG
TTTCTTCATTTAACAATAACAATAGTATCGGTTTTCCTATCCATATGTCATTCGACTTAA
CCACCTCCCCTTCAAGAAGTCCACGTTCATCTCCATTACCAAGCCCATCCTATAGTCAAG
AAAGTAGCAGCAGTAACAGTAGCAGCAGCAGTGAAGAATCATAGAATTTCTTTTTATTTA
GTAAATTTTTAATTATCAATAATCTTGATAGGTTCAATAGAGTTTTTTTAATCGTTCCTA
ATAATTTTTACAAATTTTCAATGAAATAATTTGATGAAATTCTAATATATATAGAATTTT
AATGTTATGCCAAAAATTTTTAAAATTAAATAATTATTATTGTCTCTTCTTTTCTATTGG
ACATTCTAGACAATGCATAAAAATATTTTTCAAAACGAATTTTATAAATAAGGCAAAAAA
ACTTAAATTTAAGGAGAAAAAATTTATTTCTGTGAATTATAAAATATTTCTTTATTCAAA
TTTGAAAATAAGTCGCTAT
>g13302.t9 Gene=g13302 Length=130
MRPQMIDKAKFLIEHFGFTASESLCAIEAKPPVPWNKGRASIYILRTAFGVDWSERIKII
YVGDDVTDEDAMMFKEHHFLNISKNAFYTLYSLVSRLYEAWQRRSESQVPILLKPQLNAV
CPPPIPFSPC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g13302.t9 | Gene3D | G3DSA:3.40.50.1000 | - | 4 | 96 | 2e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
