General information for g13331.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transcription factor hamlet.
Parent gene
- The parent gene g13331 is located on chr_1: 29274803..29282270 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13331 | g13331.t1 | isoform | g13331.t1 | 29274803 | 29282270 |
| chr_1 | g13331 | g13331.t1 | exon | g13331.t1.exon1 | 29274803 | 29275891 |
| chr_1 | g13331 | g13331.t1 | cds | g13331.t1.CDS1 | 29274803 | 29275891 |
| chr_1 | g13331 | g13331.t1 | exon | g13331.t1.exon2 | 29276467 | 29277426 |
| chr_1 | g13331 | g13331.t1 | cds | g13331.t1.CDS2 | 29276467 | 29277426 |
| chr_1 | g13331 | g13331.t1 | exon | g13331.t1.exon3 | 29282244 | 29282270 |
| chr_1 | g13331 | g13331.t1 | cds | g13331.t1.CDS3 | 29282244 | 29282270 |
| chr_1 | g13331 | g13331.t1 | TSS | g13331.t1 | NA | NA |
| chr_1 | g13331 | g13331.t1 | TTS | g13331.t1 | NA | NA |
Sequences
>g13331.t1 Gene=g13331 Length=2076
ATGAATCTTAATAATCAAAACAATTATGAATTTACTGATCCATCAAATCTTCAACGACAT
ATACGAACACATCACGTGGGCGCACGCAGTCACGCTTGTCCCGAGTGTGGCAAAACATTT
GCAACATCGTCAGGATTGAAGCAGCACACTCACATTCATTCATCAGTGAAGCCATTCCAG
TGTGAAGTTTGTCTTAAGGCTTACACACAATTCTCAAATTTGTGTCGTCACAAACGTATG
CATGCTGATTGTCGTATGCAAATAAAGTGCAACAAGTGTGGACAAAGTTTTAGCACAGTT
ACATCATTATCGAAACACAAGCGTTTTTGTGACTCAACAAATAGTGGCAGTAATCTCGTT
GGCAATCAACCATCATCACAGACACAACATCAAAATTCAACAACAACAGCAATGACAACA
CCACCTAATCCATTTTTGATGTTCCGCAACTCGCCATTCTTTCCACCTGGCATGGCATCA
TATCCAGGATTACAAGGAATTTTTCCACCAAGTCCAGCTCAAGCACCGCATTTTCCTTTA
TTTTTACCAAAGCATCATTTTGAAATGCCATGTTTGGATGTTGACAACACGACACCGACA
AAAGCTAACAACAAAATGTCACCATCACAAGCTGATGAAGCATCAACTAATTTGCGACCA
TCACCAGCTCGACCAGCACCTTTGAGTGTTCAGAACCTCATTAACAAACATGAAAAAAGC
TTGAGCAATAATAATAACAGCAGCAGCTTAAATAATTTTAATTATAATAGCAGTAAACGT
AAGTCAACGACAACTGACACCGATGAGAGCGAATCGACGTCATCGCCTGTTCGTAAAATC
CATTCAAATCGCATAAAAGACGAGCGCAATGGTACCGCAACCACCAAAAATGGAATGGAT
AACTTAAACCGCAAATGTTCTTTTCCAACGTCGTTGGACATGTCGAATGAAATCAAAAGT
AACAATCAAAGTGATGCTGACATCAAGGATGAAACAAATGAAAGTCATTCCGAACAGCCC
CTTGATCTGAGTGTTACAAAGAAAAGACGACGCATTCGTCAATCACCAAGTCCAAGTCCA
TTAATGATGACAGCGGCCGCTGAGACAAGTGATGAACATGAGACATCACAGTCGCCCAAA
ATTGATGTACAAAAAATCACATCGTCACCATTACAGCTTCAAAATTCAGATGAGCAGCAA
GCAAGTCGTTCGCCATCAATATCACCACGTTCTTGTTCACCACCCACGACTCATACATCA
GCTCCATCATCGCCAGGACCTCAACCACATCAAATGGCCTATCCAAGACCCATTCATCCA
CTTTTACTCGATGCCATGTATCGACCAGGCGGTCTTAATCCCTTTCAACCTCCTTTTCCT
TTTTTAGGGCCAAATTTTCGCGCCGGTTTTGATTTGCTCAATCGGAATGGAGGAAATTTT
CCTGCAAAAACGTTTCATGATGCACTAATGTCAGCTGGTGGACTTTCATCAACACCAAAC
AGTGCATCACTTTTGGCTGGAGCTGCAGTTAGTGGTAAAAACAAAGATCGTTATAGTTGC
AAATTTTGTGGTAAAAACTTTCCAAGATCAGCAAATTTGACTCGTCATTTACGAACACAC
ACTGGTGAGCAACCATACAGTTGCAAATATTGCGAGAGATCATTCAGCATATCAAGCAAC
TTGCAACGTCACGTCCGCAATATTCATAATAAGGAGCGGCCATTCAAGTGTCCACTTTGT
GAGCGATGCTTCGGGCAGCAAACGAACCTCGATCGACATCTTAAGAAACATGAAGCGGAT
GCAGCTGGCATAAGTGTAAGTTTGGCTGATTCGCCATCATCGAATGAGGCTGAACGTGAG
GATTCGTACTTTGATGAAATCCGCTCATTCATGGGCAAAGTCACTCATTACTCAGGCAAT
CCTCATCTATATGCACCACTAGCAATGACGAATGTTGATGCTGACTTGGATGAAGCAGGC
AGCAGTAGCGATAACGACTTAATAAATATCGAACATGAACATAATGACAAAGATACAATC
AATAATAATAATGATCGAATTGAAGTGACAACATGA
>g13331.t1 Gene=g13331 Length=691
MNLNNQNNYEFTDPSNLQRHIRTHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQ
CEVCLKAYTQFSNLCRHKRMHADCRMQIKCNKCGQSFSTVTSLSKHKRFCDSTNSGSNLV
GNQPSSQTQHQNSTTTAMTTPPNPFLMFRNSPFFPPGMASYPGLQGIFPPSPAQAPHFPL
FLPKHHFEMPCLDVDNTTPTKANNKMSPSQADEASTNLRPSPARPAPLSVQNLINKHEKS
LSNNNNSSSLNNFNYNSSKRKSTTTDTDESESTSSPVRKIHSNRIKDERNGTATTKNGMD
NLNRKCSFPTSLDMSNEIKSNNQSDADIKDETNESHSEQPLDLSVTKKRRRIRQSPSPSP
LMMTAAAETSDEHETSQSPKIDVQKITSSPLQLQNSDEQQASRSPSISPRSCSPPTTHTS
APSSPGPQPHQMAYPRPIHPLLLDAMYRPGGLNPFQPPFPFLGPNFRAGFDLLNRNGGNF
PAKTFHDALMSAGGLSSTPNSASLLAGAAVSGKNKDRYSCKFCGKNFPRSANLTRHLRTH
TGEQPYSCKYCERSFSISSNLQRHVRNIHNKERPFKCPLCERCFGQQTNLDRHLKKHEAD
AAGISVSLADSPSSNEAEREDSYFDEIRSFMGKVTHYSGNPHLYAPLAMTNVDADLDEAG
SSSDNDLINIEHEHNDKDTINNNNDRIEVTT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 19 | g13331.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 5 | 52 | 6.9E-12 |
| 15 | g13331.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 53 | 119 | 2.3E-11 |
| 18 | g13331.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 509 | 541 | 4.2E-12 |
| 17 | g13331.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 542 | 569 | 2.6E-12 |
| 16 | g13331.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 570 | 620 | 1.3E-8 |
| 34 | g13331.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 142 | - |
| 33 | g13331.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 217 | - |
| 35 | g13331.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 224 | - |
| 31 | g13331.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 261 | - |
| 36 | g13331.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 429 | - |
| 38 | g13331.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 293 | - |
| 39 | g13331.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 322 | - |
| 32 | g13331.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 349 | - |
| 40 | g13331.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 372 | - |
| 37 | g13331.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 427 | - |
| 8 | g13331.t1 | PANTHER | PTHR24393 | ZINC FINGER PROTEIN | 11 | 111 | 1.2E-140 |
| 10 | g13331.t1 | PANTHER | PTHR24393:SF69 | HISTONE-LYSINE N-METHYLTRANSFERASE MECOM | 11 | 111 | 1.2E-140 |
| 7 | g13331.t1 | PANTHER | PTHR24393 | ZINC FINGER PROTEIN | 505 | 641 | 1.2E-140 |
| 9 | g13331.t1 | PANTHER | PTHR24393:SF69 | HISTONE-LYSINE N-METHYLTRANSFERASE MECOM | 505 | 641 | 1.2E-140 |
| 6 | g13331.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 9 | 24 | 0.014 |
| 3 | g13331.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 31 | 53 | 4.7E-4 |
| 5 | g13331.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 59 | 81 | 0.011 |
| 4 | g13331.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 518 | 540 | 3.0E-6 |
| 2 | g13331.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 546 | 569 | 4.8E-5 |
| 1 | g13331.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 575 | 597 | 0.0013 |
| 23 | g13331.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 33 | 53 | - |
| 24 | g13331.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 61 | 81 | - |
| 22 | g13331.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 520 | 540 | - |
| 20 | g13331.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 548 | 569 | - |
| 21 | g13331.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 577 | 597 | - |
| 42 | g13331.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 31 | 58 | 14.44 |
| 46 | g13331.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 59 | 86 | 11.655 |
| 41 | g13331.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 88 | 119 | 10.741 |
| 43 | g13331.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 518 | 545 | 17.163 |
| 45 | g13331.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 546 | 574 | 15.313 |
| 44 | g13331.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 575 | 602 | 11.718 |
| 27 | g13331.t1 | SMART | SM00355 | c2h2final6 | 31 | 53 | 0.0021 |
| 30 | g13331.t1 | SMART | SM00355 | c2h2final6 | 59 | 81 | 0.13 |
| 29 | g13331.t1 | SMART | SM00355 | c2h2final6 | 88 | 108 | 13.0 |
| 28 | g13331.t1 | SMART | SM00355 | c2h2final6 | 518 | 540 | 1.6E-4 |
| 26 | g13331.t1 | SMART | SM00355 | c2h2final6 | 546 | 569 | 9.8E-4 |
| 25 | g13331.t1 | SMART | SM00355 | c2h2final6 | 575 | 597 | 0.0012 |
| 12 | g13331.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 11 | 67 | 5.46E-15 |
| 13 | g13331.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 53 | 106 | 1.51E-9 |
| 11 | g13331.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 517 | 566 | 2.68E-16 |
| 14 | g13331.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 554 | 598 | 9.6E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K04462 ([histone H3]-lysine9 N-methyltransferase (ecotropic virus integration site 1 protein))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
