General information for g13362.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13362 is located on chr_1: 29520833..29521109 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13362 | g13362.t9 | isoform | g13362.t9 | 29516041 | 29518642 |
| chr_1 | g13362 | g13362.t9 | exon | g13362.t9.exon1 | 29516041 | 29516378 |
| chr_1 | g13362 | g13362.t9 | exon | g13362.t9.exon2 | 29517064 | 29517375 |
| chr_1 | g13362 | g13362.t9 | cds | g13362.t9.CDS1 | 29517107 | 29517375 |
| chr_1 | g13362 | g13362.t9 | exon | g13362.t9.exon3 | 29517891 | 29518352 |
| chr_1 | g13362 | g13362.t9 | cds | g13362.t9.CDS2 | 29517891 | 29518352 |
| chr_1 | g13362 | g13362.t9 | exon | g13362.t9.exon4 | 29518532 | 29518642 |
| chr_1 | g13362 | g13362.t9 | cds | g13362.t9.CDS3 | 29518532 | 29518640 |
| chr_1 | g13362 | g13362.t9 | TSS | g13362.t9 | NA | NA |
| chr_1 | g13362 | g13362.t9 | TTS | g13362.t9 | NA | NA |
Sequences
>g13362.t9 Gene=g13362 Length=1223
ATGGTGAGAGAAATTTTCCGCAATTCTTACTCTCATTCCTCTCTTCGCAGCATGTTAAGC
ATGAGTATTTTTATCTTCTTAATTTTTTTTTCATTTCTACCTATTACTCGTACGATATAT
CCACGCGTTACGATTTGCACTCTTCAGTTCTATTTTATCGTTCAAACTATTCAGACGTGT
ATCGTTTTTGTATGATTCATTTTATGCGGTCTTATATTGCAATAGTTATGTGATGTTTAA
AAAGTTATTCAATAATAAAATTATCAAGTATTTTTATTAAAATAAAAGTGATAGTCATTA
CAATTGTGATTTATTTCAAAATAGATCTCTGTTCAAAGGAATATTGTATTACAAATATTT
AATAAACAAGTGGACAAAGTGATGACGAACATTTATCATGAAAAATATTTTTTCTTATAC
ATCATTGTCTTTATAATATGCATTATCAATCAATGTACAAGCATTAGTGATTTAAATCAT
TCAAATTATAAAAATGAAAATAAAAATTTCACACATCATCAGCAAAAAGACAATTTTCTT
ATCATTGATCATCTCAATGATAACGAACGAGAGACGAGACTAAAATGGAAAAATCTCATG
GGAAAGGAAACGACACTTGATATGGACAACAATGAAAGATTTGTTAACAGTTCTTTGAAA
TTAACGTCTCTATGGCAACTGACAGATGGCAAAGATTTTGCACAACTCATTTTTAATGGT
AATAGTCTCATCGATTGTGAAAATATTGATAATGGAAATGATATCATTGGTGATTTCGTG
AGTAAATTCATTGAAGAATATCAATTTATCCGTCATGAGAAATTAAGTAGTACAAAACAT
GCAAAGAAGCATCATCAATACCAACAGAATGCGAATCTTAATGAAGAAGTACTTAAAATG
AAGTCAAATGTAAAGTTTATTCAACTGAAAAAATTACAAGATATTCCCGAGCATTTACTC
AGGCTCATGAATTTGAAAAAATTGAAAAAACAATGCAATCGTTTGCATAAAAAAATAAAA
CAAAAATTGCAACAACAACATCATCATCATACGGTCGATGAAGAAGAAGATGAAGAAGAT
TTTAATGCCAAAAATGAAAATATGATACACAGAACAAAACGTCAAACTGACTCATGGTTT
TTGGCACCAAATTCGAAATGGTGTGGTAGTGGAAGTAGTGCTAATGGTTATAAAGAACTG
GGTCCTTCAAAAGCTGACACATG
>g13362.t9 Gene=g13362 Length=280
MTNIYHEKYFFLYIIVFIICIINQCTSISDLNHSNYKNENKNFTHHQQKDNFLIIDHLND
NERETRLKWKNLMGKETTLDMDNNERFVNSSLKLTSLWQLTDGKDFAQLIFNGNSLIDCE
NIDNGNDIIGDFVSKFIEEYQFIRHEKLSSTKHAKKHHQYQQNANLNEEVLKMKSNVKFI
QLKKLQDIPEHLLRLMNLKKLKKQCNRLHKKIKQKLQQQHHHHTVDEEEDEEDFNAKNEN
MIHRTKRQTDSWFLAPNSKWCGSGSSANGYKELGPSKADT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g13362.t9 | Coils | Coil | Coil | 163 | 183 | - |
| 3 | g13362.t9 | Coils | Coil | Coil | 195 | 218 | - |
| 2 | g13362.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 234 | - |
| 5 | g13362.t9 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 8 | - |
| 7 | g13362.t9 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 9 | 29 | - |
| 6 | g13362.t9 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 30 | 280 | - |
| 1 | g13362.t9 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 9 | 28 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed