General information for g13364.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Toll-interacting protein.
Parent gene
- The parent gene g13364 is located on chr_1: 29524932..29526019 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13364 | g13364.t2 | TSS | g13364.t2 | 29524246 | 29524246 |
| chr_1 | g13364 | g13364.t2 | isoform | g13364.t2 | 29524357 | 29525163 |
| chr_1 | g13364 | g13364.t2 | exon | g13364.t2.exon1 | 29524357 | 29524398 |
| chr_1 | g13364 | g13364.t2 | cds | g13364.t2.CDS1 | 29524357 | 29524398 |
| chr_1 | g13364 | g13364.t2 | exon | g13364.t2.exon2 | 29524495 | 29524617 |
| chr_1 | g13364 | g13364.t2 | cds | g13364.t2.CDS2 | 29524495 | 29524617 |
| chr_1 | g13364 | g13364.t2 | exon | g13364.t2.exon3 | 29524932 | 29525163 |
| chr_1 | g13364 | g13364.t2 | cds | g13364.t2.CDS3 | 29524932 | 29525162 |
| chr_1 | g13364 | g13364.t2 | TTS | g13364.t2 | 29526017 | 29526017 |
Sequences
>g13364.t2 Gene=g13364 Length=397
ATGGCATCAGAAGGAAGAGTATCAAAAGAAGAGTGGACAAGAGCTGTAACAACCATTCCA
CCAAACTTTTTACGATTAAACTCACAGCAAGAAGTGTTAGACAGAGAAGCAGCTTTAGCT
CTTCATCAACAACAAATTGGTCACTACAATCACATCGGTCTAGCTGCAAATACTGTTGGA
CGATTATCGATTACAGTTGCGCAAGCAAAATTAACAAAAAATTATGGACTTACACGAATG
GATCCTTATGTCAGAATTAGAGTGGGTCATTACATTTATGAAACGCAAACTGATACAAAT
GGAGGAAAAACACCACATTGGAATAGAGTGTTTCATTGTCAACTTCCAAGTGGAGTAAAT
AAAATATTTCTAGAAATTTACGATGAATGTAACTTCA
>g13364.t2 Gene=g13364 Length=132
MASEGRVSKEEWTRAVTTIPPNFLRLNSQQEVLDREAALALHQQQIGHYNHIGLAANTVG
RLSITVAQAKLTKNYGLTRMDPYVRIRVGHYIYETQTDTNGGKTPHWNRVFHCQLPSGVN
KIFLEIYDECNF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g13364.t2 | Gene3D | G3DSA:2.60.40.150 | - | 58 | 132 | 0.000 |
| 2 | g13364.t2 | PANTHER | PTHR16461 | TOLL-INTERACTING PROTEIN | 16 | 132 | 0.000 |
| 1 | g13364.t2 | Pfam | PF00168 | C2 domain | 60 | 131 | 0.000 |
| 5 | g13364.t2 | ProSiteProfiles | PS50004 | C2 domain profile. | 47 | 132 | 8.621 |
| 3 | g13364.t2 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 58 | 131 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
