General information for g13364.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Toll-interacting protein.
Parent gene
- The parent gene g13364 is located on chr_1: 29524932..29526019 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13364 | g13364.t3 | TSS | g13364.t3 | 29524246 | 29524246 |
| chr_1 | g13364 | g13364.t3 | isoform | g13364.t3 | 29524357 | 29526019 |
| chr_1 | g13364 | g13364.t3 | exon | g13364.t3.exon1 | 29524357 | 29524617 |
| chr_1 | g13364 | g13364.t3 | exon | g13364.t3.exon2 | 29524932 | 29525177 |
| chr_1 | g13364 | g13364.t3 | cds | g13364.t3.CDS1 | 29525004 | 29525177 |
| chr_1 | g13364 | g13364.t3 | exon | g13364.t3.exon3 | 29525256 | 29526019 |
| chr_1 | g13364 | g13364.t3 | cds | g13364.t3.CDS2 | 29525256 | 29525705 |
| chr_1 | g13364 | g13364.t3 | TTS | g13364.t3 | 29526017 | 29526017 |
Sequences
>g13364.t3 Gene=g13364 Length=1271
ATGGCATCAGAAGGAAGAGTATCAAAAGAAGAGTGGACAAGAGTAAGTTAGATGAATTAA
AAATCTTGTTTGTCTGAAATTTATGACTCATCATATATCTCTTTTTCTTTCATAAATCAT
TAATGTCGCGATAATTAGGCTGTAACAACCATTCCACCAAACTTTTTACGATTAAACTCA
CAGCAAGAAGTGTTAGACAGAGAAGCAGCTTTAGCTCTTCATCAACAACAAATTGGTCAC
TACAATCACATCGGTCTAGCTGCAAATACTGTTGGACGATTATCGATTACAGTTGCGCAA
GCAAAATTAACAAAAAATTATGGACTTACACGAATGGATCCTTATGTCAGAATTAGAGTG
GGTCATTACATTTATGAAACGCAAACTGATACAAATGGAGGAAAAACACCACATTGGAAT
AGAGTGTTTCATTGTCAACTTCCAAGTGGAGTAAATAAAATATTTCTAGAAATTTACGAT
GAATGTAACTTCACTATGGATGAATTGATTGCATGGGCAGAAATCAGAATTCCAGAAGCT
GTTATTGAAAAATGTGAGACACATGAGGACTGGTATGCACTATCTGGAAAAACAGGAGAC
AATAAGGAAGGCATGATTGATCTTGTTCTTAGTTTTACACCAGCTTCATGTTTATATCAA
AGACCAGCAATTGGTCAGCAACAAGTTGTACTTGTACCAAATGTTTCGAACCGTGCCCTT
CCTGTTTATGTATCTCCAACACCAGTACAACAAATTGCTCAACAACCACAATTGCCACAA
CAACAGCAGCAGCCAATAGAAATGCCAGCAGTACCACAAACTTTGACTGATGAAGATATA
GCAAACCTTATGGAAATGTTTCCAAGTGTTGACAAAGATGTCATTAAATCAATTGGAGAG
GCTAATAGAGGAGACAAAAACGCTACAATTAATTCTTTACTACAATTAACCAACTAAAAC
AATTTTGGAGGCGGGTAACAGCTCACGAAAACAAAACAAAATGAAGTAAAAGACAAACAA
GTTTAAATATTGATGATCAAGATGATGATAATCCAATTTTAATGTGCGAAAACTTATTTT
GCTATGCATATGCAAGTCAAAAAAAATCACCAAAACTTTTATTAACTATTTTTTTCATAT
ATACAATTTATGTCGACTTTATTCGAAAGCAAAAGAATTATGGTATACATATATATTTCT
TTTTTCCTATGCTACCCTATATGTATGTAATTTTATGCTTAATATAAAATAAAAATATAT
TGGAAAGAGAA
>g13364.t3 Gene=g13364 Length=207
MDPYVRIRVGHYIYETQTDTNGGKTPHWNRVFHCQLPSGVNKIFLEIYDECNFTMDELIA
WAEIRIPEAVIEKCETHEDWYALSGKTGDNKEGMIDLVLSFTPASCLYQRPAIGQQQVVL
VPNVSNRALPVYVSPTPVQQIAQQPQLPQQQQQPIEMPAVPQTLTDEDIANLMEMFPSVD
KDVIKSIGEANRGDKNATINSLLQLTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g13364.t3 | Gene3D | G3DSA:2.60.40.150 | - | 1 | 104 | 0.000e+00 |
| 7 | g13364.t3 | Gene3D | G3DSA:1.10.8.10 | DNA helicase RuvA subunit | 160 | 207 | 0.000e+00 |
| 3 | g13364.t3 | PANTHER | PTHR16461 | TOLL-INTERACTING PROTEIN | 1 | 206 | 0.000e+00 |
| 1 | g13364.t3 | Pfam | PF00168 | C2 domain | 1 | 83 | 0.000e+00 |
| 2 | g13364.t3 | Pfam | PF02845 | CUE domain | 166 | 205 | 0.000e+00 |
| 9 | g13364.t3 | ProSiteProfiles | PS50004 | C2 domain profile. | 1 | 63 | 8.503e+00 |
| 10 | g13364.t3 | ProSiteProfiles | PS51140 | CUE domain profile. | 164 | 207 | 1.557e+01 |
| 6 | g13364.t3 | SMART | SM00546 | cue_7 | 164 | 206 | 7.000e-07 |
| 4 | g13364.t3 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 1 | 106 | 0.000e+00 |
| 5 | g13364.t3 | SUPERFAMILY | SSF46934 | UBA-like | 158 | 206 | 0.000e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0043130 | ubiquitin binding | MF |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
