General information for g13377.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Epoxide hydrolase 4.
Parent gene
- The parent gene g13377 is located on chr_1: 29604587..29606004 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13377 | g13377.t2 | isoform | g13377.t2 | 29604024 | 29605215 |
| chr_1 | g13377 | g13377.t2 | exon | g13377.t2.exon1 | 29604024 | 29604439 |
| chr_1 | g13377 | g13377.t2 | TTS | g13377.t2 | 29604035 | 29604035 |
| chr_1 | g13377 | g13377.t2 | exon | g13377.t2.exon2 | 29604495 | 29605056 |
| chr_1 | g13377 | g13377.t2 | cds | g13377.t2.CDS1 | 29604587 | 29605056 |
| chr_1 | g13377 | g13377.t2 | exon | g13377.t2.exon3 | 29605119 | 29605215 |
| chr_1 | g13377 | g13377.t2 | cds | g13377.t2.CDS2 | 29605119 | 29605152 |
| chr_1 | g13377 | g13377.t2 | TSS | g13377.t2 | 29606084 | 29606084 |
Sequences
>g13377.t2 Gene=g13377 Length=1075
AAATTTATACTTATTGCTCATGACTGGGGTGCTGCAGTTGGTTTCAACTATGTTTATCGT
TATATGGACACAATTGAAAAATATGTTATGATAGGAGGCCCACCTAGTGAAGCATGGAAA
AAATTGATTGTCAGTTCACCAAAACAATTTATTATGAGTTGGTACATTTTTTTCTTTCAA
ATGCCTTGGCTTCCTGAATTTGTCATTCGTTGTAACGATTTGAAATCGTTTGATACTATG
AGATTGGGTTCAAAGGAAGACGTTGAATGCTTCAAATATACTTTTTCTAAACCAGGTGCA
TTAACTTCACCAATTAATTATTATCGTGCAATAAAAGTGTTAAACCCTGACCCTCCATTA
AAGAAGCCAGCAAATTGTGCACCAGGACTTTTTTTGTTGGGCGAATATGATAAATATATA
GCACGCTCGACAGGAAAGTTAGCTAAGGCTGAACTTGATAATTTAGATTTTAAACTAATT
ATGAGTGCAAACCATTTTGCACAACAACATAAACCAGAAGAAACAAATCGCATGATTCGT
GAATTTCTTGATAAGAAAATGCAGTAAAGAATATTAATAACATCAGTTATTATCTGGGAT
TTAATATCAGTGATATTAAAAGAATTCAACAACAAAGTTAAGCTTTAAATAAAAAAGTTT
CTCTACACATCACTGAATTTATATTTGCCATAAAAATACATTGGTCGCAACGAATAAATT
TTATATGGAGAAAGTTTCATAATACAACACATTCAATTAAGTTACATTTAAAGCCTCTCA
TAAATCTTTCTTTTTTGGTCAAGAAGTGAGCTTAATTTGAGACAAAAATATAAGAAATAT
TTGAACTTTAACAATGAATTGGCACACGTACTACAAAACAAATGATTAATTGCAAAATTC
CCTAAAAATCGGAAATAAGCATAAATAAGATATTTTTTGAATATTCTACATATTATTGTT
TATTTGAATTTTGTAAACTGACTGCGATGTTTTTGAAAACAAAAATTTGCAGAAAAACAT
GCAAGAATAAATGAGAAATGTTTAATAAAGGATTATTTTTCAATCTATTTTAAAA
>g13377.t2 Gene=g13377 Length=167
MDTIEKYVMIGGPPSEAWKKLIVSSPKQFIMSWYIFFFQMPWLPEFVIRCNDLKSFDTMR
LGSKEDVECFKYTFSKPGALTSPINYYRAIKVLNPDPPLKKPANCAPGLFLLGEYDKYIA
RSTGKLAKAELDNLDFKLIMSANHFAQQHKPEETNRMIREFLDKKMQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g13377.t2 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 163 | 0 |
| 1 | g13377.t2 | PANTHER | PTHR43329 | EPOXIDE HYDROLASE | 2 | 163 | 0 |
| 2 | g13377.t2 | PANTHER | PTHR43329:SF17 | EPOXIDE HYDROLASE 1 | 2 | 163 | 0 |
| 3 | g13377.t2 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 4 | 164 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
