Gene loci information

Transcript annotation

  • This transcript has been annotated as Epoxide hydrolase 3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13377 g13377.t4 TTS g13377.t4 29604474 29604474
chr_1 g13377 g13377.t4 isoform g13377.t4 29604587 29606004
chr_1 g13377 g13377.t4 exon g13377.t4.exon1 29604587 29605056
chr_1 g13377 g13377.t4 cds g13377.t4.CDS1 29604587 29605056
chr_1 g13377 g13377.t4 exon g13377.t4.exon2 29605119 29605219
chr_1 g13377 g13377.t4 cds g13377.t4.CDS2 29605119 29605219
chr_1 g13377 g13377.t4 exon g13377.t4.exon3 29605498 29605739
chr_1 g13377 g13377.t4 cds g13377.t4.CDS3 29605498 29605739
chr_1 g13377 g13377.t4 exon g13377.t4.exon4 29605804 29606004
chr_1 g13377 g13377.t4 cds g13377.t4.CDS4 29605804 29606004
chr_1 g13377 g13377.t4 TSS g13377.t4 29606084 29606084

Sequences

>g13377.t4 Gene=g13377 Length=1014
ATGACCACACCAATTGATGTGATAAAATTTTTAGTCTTTAATTTTTTGACAATTTTTTAC
TCGGCTTGTATTGGTATTACTATCGTGATAAATTACATATTTAATTCTAAATCACGTTTT
TGGGAAGTGAAAGATCGTCCAGAGCCACCAGCTGCACTTAAGAGTGAAGAGCATGGTGTT
CATAAGTTTATTCAAGTGAATGGCATCAAACTTCATTATGTGGAGAAAGGCAATCCAACT
AAACCATTGATTGTTTTCGTTCATGGTTTTCCAGAGTTTTGGTATAGTTGGCGGCATCAA
ATTAAAGAATTTAGTAAAGATTATTGGACGATAACAATTGATCAGCGTGGATATGGAGAT
TCAGAAAAGCCAAGTAAAATTTCTGAATATCATATCAATAACATGGCTGATGATATACGT
GCACTAGTAAAGAAGTTGGGTAAAGAAAAATTTATACTTATTGCTCATGACTGGGGTGCT
GCAGTTGGTTTCAACTATGTTTATCGTTATATGGACACAATTGAAAAATATGTTATGATA
GGAGGCCCACCTAGTGAAGCATGGAAAAAATTGATTGTCAGTTCACCAAAACAATTTATT
ATGAGTTGGTACATTTTTTTCTTTCAAATGCCTTGGCTTCCTGAATTTGTCATTCGTTGT
AACGATTTGAAATCGTTTGATACTATGAGATTGGGTTCAAAGGAAGACGTTGAATGCTTC
AAATATACTTTTTCTAAACCAGGTGCATTAACTTCACCAATTAATTATTATCGTGCAATA
AAAGTGTTAAACCCTGACCCTCCATTAAAGAAGCCAGCAAATTGTGCACCAGGACTTTTT
TTGTTGGGCGAATATGATAAATATATAGCACGCTCGACAGGAAAGTTAGCTAAGGCTGAA
CTTGATAATTTAGATTTTAAACTAATTATGAGTGCAAACCATTTTGCACAACAACATAAA
CCAGAAGAAACAAATCGCATGATTCGTGAATTTCTTGATAAGAAAATGCAGTAA

>g13377.t4 Gene=g13377 Length=337
MTTPIDVIKFLVFNFLTIFYSACIGITIVINYIFNSKSRFWEVKDRPEPPAALKSEEHGV
HKFIQVNGIKLHYVEKGNPTKPLIVFVHGFPEFWYSWRHQIKEFSKDYWTITIDQRGYGD
SEKPSKISEYHINNMADDIRALVKKLGKEKFILIAHDWGAAVGFNYVYRYMDTIEKYVMI
GGPPSEAWKKLIVSSPKQFIMSWYIFFFQMPWLPEFVIRCNDLKSFDTMRLGSKEDVECF
KYTFSKPGALTSPINYYRAIKVLNPDPPLKKPANCAPGLFLLGEYDKYIARSTGKLAKAE
LDNLDFKLIMSANHFAQQHKPEETNRMIREFLDKKMQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13377.t4 Gene3D G3DSA:3.40.50.1820 - 60 333 8.1E-74
2 g13377.t4 PANTHER PTHR43329 EPOXIDE HYDROLASE 19 333 2.6E-80
3 g13377.t4 PANTHER PTHR43329:SF17 EPOXIDE HYDROLASE 1 19 333 2.6E-80
7 g13377.t4 PRINTS PR00412 Epoxide hydrolase signature 88 106 3.4E-15
5 g13377.t4 PRINTS PR00412 Epoxide hydrolase signature 153 166 3.4E-15
6 g13377.t4 PRINTS PR00412 Epoxide hydrolase signature 276 292 3.4E-15
4 g13377.t4 PRINTS PR00412 Epoxide hydrolase signature 309 331 3.4E-15
1 g13377.t4 Pfam PF00561 alpha/beta hydrolase fold 82 198 1.3E-22
12 g13377.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
13 g13377.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -
11 g13377.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 35 337 -
9 g13377.t4 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 61 334 9.86E-67
8 g13377.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed