Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Epoxide hydrolase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13377 g13377.t6 TTS g13377.t6 29604474 29604474
chr_1 g13377 g13377.t6 isoform g13377.t6 29604587 29606004
chr_1 g13377 g13377.t6 exon g13377.t6.exon1 29604587 29604790
chr_1 g13377 g13377.t6 cds g13377.t6.CDS1 29604744 29604790
chr_1 g13377 g13377.t6 exon g13377.t6.exon2 29604859 29605056
chr_1 g13377 g13377.t6 cds g13377.t6.CDS2 29604859 29605056
chr_1 g13377 g13377.t6 exon g13377.t6.exon3 29605119 29605219
chr_1 g13377 g13377.t6 cds g13377.t6.CDS3 29605119 29605219
chr_1 g13377 g13377.t6 exon g13377.t6.exon4 29605498 29605739
chr_1 g13377 g13377.t6 cds g13377.t6.CDS4 29605498 29605739
chr_1 g13377 g13377.t6 exon g13377.t6.exon5 29605804 29606004
chr_1 g13377 g13377.t6 cds g13377.t6.CDS5 29605804 29606004
chr_1 g13377 g13377.t6 TSS g13377.t6 29606084 29606084

Sequences

>g13377.t6 Gene=g13377 Length=946
ATGACCACACCAATTGATGTGATAAAATTTTTAGTCTTTAATTTTTTGACAATTTTTTAC
TCGGCTTGTATTGGTATTACTATCGTGATAAATTACATATTTAATTCTAAATCACGTTTT
TGGGAAGTGAAAGATCGTCCAGAGCCACCAGCTGCACTTAAGAGTGAAGAGCATGGTGTT
CATAAGTTTATTCAAGTGAATGGCATCAAACTTCATTATGTGGAGAAAGGCAATCCAACT
AAACCATTGATTGTTTTCGTTCATGGTTTTCCAGAGTTTTGGTATAGTTGGCGGCATCAA
ATTAAAGAATTTAGTAAAGATTATTGGACGATAACAATTGATCAGCGTGGATATGGAGAT
TCAGAAAAGCCAAGTAAAATTTCTGAATATCATATCAATAACATGGCTGATGATATACGT
GCACTAGTAAAGAAGTTGGGTAAAGAAAAATTTATACTTATTGCTCATGACTGGGGTGCT
GCAGTTGGTTTCAACTATGTTTATCGTTATATGGACACAATTGAAAAATATGTTATGATA
GGAGGCCCACCTAGTGAAGCATGGAAAAAATTGATTGTCAGTTCACCAAAACAATTTATT
ATGAGTTGGTACATTTTTTTCTTTCAAATGCCTTGGCTTCCTGAATTTGTCATTCGTTGT
AACGATTTGAAATCGTTTGATACTATGAGATTGGGTTCAAAGGAAGACGTTGAATGCTTC
AAATATACTTTTTCTAAACCAGAAGCCAGCAAATTGTGCACCAGGACTTTTTTTGTTGGG
CGAATATGATAAATATATAGCACGCTCGACAGGAAAGTTAGCTAAGGCTGAACTTGATAA
TTTAGATTTTAAACTAATTATGAGTGCAAACCATTTTGCACAACAACATAAACCAGAAGA
AACAAATCGCATGATTCGTGAATTTCTTGATAAGAAAATGCAGTAA

>g13377.t6 Gene=g13377 Length=262
MTTPIDVIKFLVFNFLTIFYSACIGITIVINYIFNSKSRFWEVKDRPEPPAALKSEEHGV
HKFIQVNGIKLHYVEKGNPTKPLIVFVHGFPEFWYSWRHQIKEFSKDYWTITIDQRGYGD
SEKPSKISEYHINNMADDIRALVKKLGKEKFILIAHDWGAAVGFNYVYRYMDTIEKYVMI
GGPPSEAWKKLIVSSPKQFIMSWYIFFFQMPWLPEFVIRCNDLKSFDTMRLGSKEDVECF
KYTFSKPEASKLCTRTFFVGRI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g13377.t6 Gene3D G3DSA:3.40.50.1820 - 52 256 1.5E-57
2 g13377.t6 PANTHER PTHR43329 EPOXIDE HYDROLASE 19 249 2.4E-61
3 g13377.t6 PANTHER PTHR43329:SF17 EPOXIDE HYDROLASE 1 19 249 2.4E-61
5 g13377.t6 PRINTS PR00412 Epoxide hydrolase signature 88 106 1.5E-7
4 g13377.t6 PRINTS PR00412 Epoxide hydrolase signature 153 166 1.5E-7
1 g13377.t6 Pfam PF00561 alpha/beta hydrolase fold 82 198 7.4E-23
10 g13377.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
11 g13377.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -
9 g13377.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 35 262 -
7 g13377.t6 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 61 248 9.67E-51
6 g13377.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed