Gene loci information

Transcript annotation

  • This transcript has been annotated as Juvenile hormone epoxide hydrolase 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13392 g13392.t1 isoform g13392.t1 29679145 29683114
chr_1 g13392 g13392.t1 exon g13392.t1.exon1 29679145 29679225
chr_1 g13392 g13392.t1 exon g13392.t1.exon2 29679284 29679370
chr_1 g13392 g13392.t1 exon g13392.t1.exon3 29680635 29680740
chr_1 g13392 g13392.t1 cds g13392.t1.CDS1 29680635 29680740
chr_1 g13392 g13392.t1 exon g13392.t1.exon4 29680895 29680983
chr_1 g13392 g13392.t1 cds g13392.t1.CDS2 29680895 29680983
chr_1 g13392 g13392.t1 exon g13392.t1.exon5 29681227 29681432
chr_1 g13392 g13392.t1 cds g13392.t1.CDS3 29681227 29681432
chr_1 g13392 g13392.t1 exon g13392.t1.exon6 29681507 29681799
chr_1 g13392 g13392.t1 cds g13392.t1.CDS4 29681507 29681799
chr_1 g13392 g13392.t1 exon g13392.t1.exon7 29682059 29682121
chr_1 g13392 g13392.t1 cds g13392.t1.CDS5 29682059 29682121
chr_1 g13392 g13392.t1 exon g13392.t1.exon8 29682474 29683114
chr_1 g13392 g13392.t1 cds g13392.t1.CDS6 29682474 29683114
chr_1 g13392 g13392.t1 TTS g13392.t1 29683187 29683187
chr_1 g13392 g13392.t1 TSS g13392.t1 NA NA

Sequences

>g13392.t1 Gene=g13392 Length=1566
ATGTTTCATATAAGCATCACCATCATCAAAATATATCGTTGTATACACATCACTACACAT
ACTAGAATACCTTTTTTACATTTAAATTCAGTACGCGTTAGACTAGAAACGCCGGTAAGC
CAGAATATCTACCATAGAGTGAGGAGAAGAAAAAAAACCACAGAAAAGATGGGAGCACTG
AAAAATGTTTTCTACAGTGCGTTGGCACTTGCAATCGCATTTTCTTATCAGACTTATAGA
GATTTAACAAAGCCATTTCCAAGACCCGAATTAGATTTAAACGAATATTGGGGTCGTGGA
AATGCGAAGAACTATAAAGAAGATAAAACGATTAAACCATTCAAAATTTCATATTCTGCT
GAGGTAATAAAACGTTTAACGGATAAACTCAGTGATGGGCAAGCTCAAGCCTTTACCGAG
CCACTCGAAAATACAGCATTTGAATATGGATTTAATACGAAGCACTTACAAGTTGTATTA
AATTATTGGAAAGACCAATATCTGCCGAAATGGAATGAACGTGAACAGTTTTTGAATCAG
TTTCCGCAATTTACCACACAAATACAAGGCTTAAATATTCATTTTATTCATGCAAAACCA
ACAAAGACAAATGCAAATACCAAAGTTTTTCCATTGATTTTACTTCATGGTTGGCCAGGA
TCAGTGCGTGAATTCTATGACATTATTCCATTGCTAACAACTCCTTCAAAAGATAACATA
GCGTTTGAAGTCATTGCCCCGTCATTACCTGGTTATGGTTGGAGTGAAGCTGCAAAAAAA
CAAGGATTGGGTGCAGTTCGTATTGCTGTTATTTTTAGAAATCTCATGAAACGACTCGGA
ATTGAAAAATATTATATACAAGGTGGAGATTGGGGCTCACTCATTGGAATAAATATGGCA
ACACTCTTTCCTGAGAATGTTTTAGGCTACCATACAAACATGTGCGGAATAAACACACCT
ATGGCTAACATCAAAATGTTTATTGCATCGTTTTATCCTTCATACTTTATGGATGAGAAA
TACGTCAGCTGGGTGTATCCATTTTGGCCGAAATTTGTAGATTTGTTACAAGAGAGCGGC
TATATGCATATTCAAGCAACTAAGCCCGATACAATTGGTGTTGCATTGAACAATAATCCA
ATTGGTCTTGCAGCATACATACTCGAGAAATTTTCGACATGGACAAACAAGGACTATCGA
AAACTTGCTGATGGTGGACTTGAAAAATATTTTACAATGGATGCATTGCTGGATAATGTC
ATGATTTATTATCTCACAAATTCTATCACGACATCGCAGCGAATTTACAAGGAAGTTTTT
GGCGATGAATTTGTAAATTTGCCTCTTGATAGAGTTCCATTGGAAATTCCATCAGCATGT
GCTAATTTCAAAAATGAACTCTTGACTACTCCAGAATTTACTCTGAAAGAAAAACATAAA
TTTTTATTACAATCAAATTATTATGAGGATGGCGGTCATTTTGCTGCTATGCAACTACCA
AAAGTTCTTTATAATGACATTATTGAATTTATACGAAAAACATTGGAACAAAAAAATCAA
AATTAA

>g13392.t1 Gene=g13392 Length=465
MGALKNVFYSALALAIAFSYQTYRDLTKPFPRPELDLNEYWGRGNAKNYKEDKTIKPFKI
SYSAEVIKRLTDKLSDGQAQAFTEPLENTAFEYGFNTKHLQVVLNYWKDQYLPKWNEREQ
FLNQFPQFTTQIQGLNIHFIHAKPTKTNANTKVFPLILLHGWPGSVREFYDIIPLLTTPS
KDNIAFEVIAPSLPGYGWSEAAKKQGLGAVRIAVIFRNLMKRLGIEKYYIQGGDWGSLIG
INMATLFPENVLGYHTNMCGINTPMANIKMFIASFYPSYFMDEKYVSWVYPFWPKFVDLL
QESGYMHIQATKPDTIGVALNNNPIGLAAYILEKFSTWTNKDYRKLADGGLEKYFTMDAL
LDNVMIYYLTNSITTSQRIYKEVFGDEFVNLPLDRVPLEIPSACANFKNELLTTPEFTLK
EKHKFLLQSNYYEDGGHFAAMQLPKVLYNDIIEFIRKTLEQKNQN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g13392.t1 Coils Coil Coil 452 465 -
2 g13392.t1 PANTHER PTHR21661:SF35 EPOXIDE HYDROLASE 12 463 6.6E-167
3 g13392.t1 PANTHER PTHR21661 EPOXIDE HYDROLASE 1-RELATED 12 463 6.6E-167
18 g13392.t1 PIRSF PIRSF001112 Epoxide_hydro 3 461 2.7E-155
9 g13392.t1 PRINTS PR00412 Epoxide hydrolase signature 160 178 3.4E-22
5 g13392.t1 PRINTS PR00412 Epoxide hydrolase signature 185 200 3.4E-22
8 g13392.t1 PRINTS PR00412 Epoxide hydrolase signature 230 243 3.4E-22
6 g13392.t1 PRINTS PR00412 Epoxide hydrolase signature 244 257 3.4E-22
4 g13392.t1 PRINTS PR00412 Epoxide hydrolase signature 400 416 3.4E-22
7 g13392.t1 PRINTS PR00412 Epoxide hydrolase signature 432 454 3.4E-22
1 g13392.t1 Pfam PF06441 Epoxide hydrolase N terminus 55 169 2.3E-28
14 g13392.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
15 g13392.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 6 -
16 g13392.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 7 14 -
17 g13392.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 19 -
13 g13392.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 465 -
10 g13392.t1 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 46 457 4.8E-90
11 g13392.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 19 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0033961 cis-stilbene-oxide hydrolase activity MF
GO:0003824 catalytic activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values