General information for g13392.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Juvenile hormone epoxide hydrolase 2.
Parent gene
- The parent gene g13392 is located on chr_1: 29681795..29683114 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13392 | g13392.t3 | isoform | g13392.t3 | 29679145 | 29683114 |
| chr_1 | g13392 | g13392.t3 | exon | g13392.t3.exon1 | 29679145 | 29679370 |
| chr_1 | g13392 | g13392.t3 | exon | g13392.t3.exon2 | 29680635 | 29680740 |
| chr_1 | g13392 | g13392.t3 | cds | g13392.t3.CDS1 | 29680635 | 29680740 |
| chr_1 | g13392 | g13392.t3 | exon | g13392.t3.exon3 | 29680895 | 29680983 |
| chr_1 | g13392 | g13392.t3 | cds | g13392.t3.CDS2 | 29680895 | 29680983 |
| chr_1 | g13392 | g13392.t3 | exon | g13392.t3.exon4 | 29681227 | 29681432 |
| chr_1 | g13392 | g13392.t3 | cds | g13392.t3.CDS3 | 29681227 | 29681432 |
| chr_1 | g13392 | g13392.t3 | exon | g13392.t3.exon5 | 29681507 | 29681799 |
| chr_1 | g13392 | g13392.t3 | cds | g13392.t3.CDS4 | 29681507 | 29681799 |
| chr_1 | g13392 | g13392.t3 | exon | g13392.t3.exon6 | 29682059 | 29682121 |
| chr_1 | g13392 | g13392.t3 | cds | g13392.t3.CDS5 | 29682059 | 29682121 |
| chr_1 | g13392 | g13392.t3 | exon | g13392.t3.exon7 | 29682474 | 29683114 |
| chr_1 | g13392 | g13392.t3 | cds | g13392.t3.CDS6 | 29682474 | 29683114 |
| chr_1 | g13392 | g13392.t3 | TTS | g13392.t3 | 29683187 | 29683187 |
| chr_1 | g13392 | g13392.t3 | TSS | g13392.t3 | NA | NA |
Sequences
>g13392.t3 Gene=g13392 Length=1624
ATGTTTCATATAAGCATCACCATCATCAAAATATATCGTTGTATACACATCACTACACAT
ACTAGAATACCTTTTTTACATGTGAGTAAAATTATTTTGTTTATTAACATCCCAATATAA
ATGTTCACTTTATCATCAGTTAAATTCAGTACGCGTTAGACTAGAAACGCCGGTAAGCCA
GAATATCTACCATAGAGTGAGGAGAAGAAAAAAAACCACAGAAAAGATGGGAGCACTGAA
AAATGTTTTCTACAGTGCGTTGGCACTTGCAATCGCATTTTCTTATCAGACTTATAGAGA
TTTAACAAAGCCATTTCCAAGACCCGAATTAGATTTAAACGAATATTGGGGTCGTGGAAA
TGCGAAGAACTATAAAGAAGATAAAACGATTAAACCATTCAAAATTTCATATTCTGCTGA
GGTAATAAAACGTTTAACGGATAAACTCAGTGATGGGCAAGCTCAAGCCTTTACCGAGCC
ACTCGAAAATACAGCATTTGAATATGGATTTAATACGAAGCACTTACAAGTTGTATTAAA
TTATTGGAAAGACCAATATCTGCCGAAATGGAATGAACGTGAACAGTTTTTGAATCAGTT
TCCGCAATTTACCACACAAATACAAGGCTTAAATATTCATTTTATTCATGCAAAACCAAC
AAAGACAAATGCAAATACCAAAGTTTTTCCATTGATTTTACTTCATGGTTGGCCAGGATC
AGTGCGTGAATTCTATGACATTATTCCATTGCTAACAACTCCTTCAAAAGATAACATAGC
GTTTGAAGTCATTGCCCCGTCATTACCTGGTTATGGTTGGAGTGAAGCTGCAAAAAAACA
AGGATTGGGTGCAGTTCGTATTGCTGTTATTTTTAGAAATCTCATGAAACGACTCGGAAT
TGAAAAATATTATATACAAGGTGGAGATTGGGGCTCACTCATTGGAATAAATATGGCAAC
ACTCTTTCCTGAGAATGTTTTAGGCTACCATACAAACATGTGCGGAATAAACACACCTAT
GGCTAACATCAAAATGTTTATTGCATCGTTTTATCCTTCATACTTTATGGATGAGAAATA
CGTCAGCTGGGTGTATCCATTTTGGCCGAAATTTGTAGATTTGTTACAAGAGAGCGGCTA
TATGCATATTCAAGCAACTAAGCCCGATACAATTGGTGTTGCATTGAACAATAATCCAAT
TGGTCTTGCAGCATACATACTCGAGAAATTTTCGACATGGACAAACAAGGACTATCGAAA
ACTTGCTGATGGTGGACTTGAAAAATATTTTACAATGGATGCATTGCTGGATAATGTCAT
GATTTATTATCTCACAAATTCTATCACGACATCGCAGCGAATTTACAAGGAAGTTTTTGG
CGATGAATTTGTAAATTTGCCTCTTGATAGAGTTCCATTGGAAATTCCATCAGCATGTGC
TAATTTCAAAAATGAACTCTTGACTACTCCAGAATTTACTCTGAAAGAAAAACATAAATT
TTTATTACAATCAAATTATTATGAGGATGGCGGTCATTTTGCTGCTATGCAACTACCAAA
AGTTCTTTATAATGACATTATTGAATTTATACGAAAAACATTGGAACAAAAAAATCAAAA
TTAA
>g13392.t3 Gene=g13392 Length=465
MGALKNVFYSALALAIAFSYQTYRDLTKPFPRPELDLNEYWGRGNAKNYKEDKTIKPFKI
SYSAEVIKRLTDKLSDGQAQAFTEPLENTAFEYGFNTKHLQVVLNYWKDQYLPKWNEREQ
FLNQFPQFTTQIQGLNIHFIHAKPTKTNANTKVFPLILLHGWPGSVREFYDIIPLLTTPS
KDNIAFEVIAPSLPGYGWSEAAKKQGLGAVRIAVIFRNLMKRLGIEKYYIQGGDWGSLIG
INMATLFPENVLGYHTNMCGINTPMANIKMFIASFYPSYFMDEKYVSWVYPFWPKFVDLL
QESGYMHIQATKPDTIGVALNNNPIGLAAYILEKFSTWTNKDYRKLADGGLEKYFTMDAL
LDNVMIYYLTNSITTSQRIYKEVFGDEFVNLPLDRVPLEIPSACANFKNELLTTPEFTLK
EKHKFLLQSNYYEDGGHFAAMQLPKVLYNDIIEFIRKTLEQKNQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g13392.t3 | PANTHER | PTHR21661:SF35 | EPOXIDE HYDROLASE | 12 | 463 | 6.6E-167 |
| 3 | g13392.t3 | PANTHER | PTHR21661 | EPOXIDE HYDROLASE 1-RELATED | 12 | 463 | 6.6E-167 |
| 17 | g13392.t3 | PIRSF | PIRSF001112 | Epoxide_hydro | 3 | 461 | 2.7E-155 |
| 9 | g13392.t3 | PRINTS | PR00412 | Epoxide hydrolase signature | 160 | 178 | 3.4E-22 |
| 5 | g13392.t3 | PRINTS | PR00412 | Epoxide hydrolase signature | 185 | 200 | 3.4E-22 |
| 8 | g13392.t3 | PRINTS | PR00412 | Epoxide hydrolase signature | 230 | 243 | 3.4E-22 |
| 6 | g13392.t3 | PRINTS | PR00412 | Epoxide hydrolase signature | 244 | 257 | 3.4E-22 |
| 4 | g13392.t3 | PRINTS | PR00412 | Epoxide hydrolase signature | 400 | 416 | 3.4E-22 |
| 7 | g13392.t3 | PRINTS | PR00412 | Epoxide hydrolase signature | 432 | 454 | 3.4E-22 |
| 1 | g13392.t3 | Pfam | PF06441 | Epoxide hydrolase N terminus | 55 | 169 | 2.3E-28 |
| 13 | g13392.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 14 | g13392.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 15 | g13392.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 14 | - |
| 16 | g13392.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 19 | - |
| 12 | g13392.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 465 | - |
| 10 | g13392.t3 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 46 | 457 | 4.8E-90 |
| 11 | g13392.t3 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0033961 | cis-stilbene-oxide hydrolase activity | MF |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K10719 (juvenile hormone epoxide hydrolase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
