Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13406 g13406.t1 TSS g13406.t1 29872126 29872126
chr_1 g13406 g13406.t1 isoform g13406.t1 29872224 29879557
chr_1 g13406 g13406.t1 exon g13406.t1.exon1 29872224 29872298
chr_1 g13406 g13406.t1 cds g13406.t1.CDS1 29872224 29872298
chr_1 g13406 g13406.t1 exon g13406.t1.exon2 29872358 29875013
chr_1 g13406 g13406.t1 cds g13406.t1.CDS2 29872358 29875013
chr_1 g13406 g13406.t1 exon g13406.t1.exon3 29875069 29876943
chr_1 g13406 g13406.t1 cds g13406.t1.CDS3 29875069 29876943
chr_1 g13406 g13406.t1 exon g13406.t1.exon4 29877000 29877217
chr_1 g13406 g13406.t1 cds g13406.t1.CDS4 29877000 29877217
chr_1 g13406 g13406.t1 exon g13406.t1.exon5 29877269 29879155
chr_1 g13406 g13406.t1 cds g13406.t1.CDS5 29877269 29879155
chr_1 g13406 g13406.t1 exon g13406.t1.exon6 29879213 29879557
chr_1 g13406 g13406.t1 cds g13406.t1.CDS6 29879213 29879557
chr_1 g13406 g13406.t1 TTS g13406.t1 NA NA

Sequences

>g13406.t1 Gene=g13406 Length=7056
ATGTTAATTAAAAATAGTGCAATAATTTTATGGATAATTATTTGTTTGTCATCAATTAAA
TGTGAAAAATCAAAGCTTGATGAAGATGAGAGAGTAGAAACAGTTGATAAATTGCGTGAA
GAGCTTCAGCAATTAAATAAATTACCAGATACAACTCCAAGAATCTTAAGTAATCAAACA
TTGATCGATATAAATGCTTTGAAAAATGAAATTTTAAAATCACCTCGAATTAACATTGAA
TTCAGTACAAATCTAACAAAAATGTTAAAAGATGCAGAGCATAAAAAAGAGCCAATTGTA
GGTGTGTATATTCCTTCAGATGAAGATGATCAATTCATTGAAGAGAAAGAATCAAATTTT
CAGAATAACCCTAAATTAAATGAGAGTTTTCAACCTAATGATGACGAAATCAAGCTACTT
ACAAAGTTGAAGCATTCTGAAAGTAATATGCACAATTTATACAGAGAAAATCTTGTCATC
AGATCCATTCAAGAACAGTTTGCATTTAAAATTGGTACAAATGTCGAAGAATGGAAGACA
CTTTTACTTGAAAAAGAAGTTGCATTGATTGGAAAATCAAAAAATAGTATTATACTTGCA
ATCGGATCTGAGAAAATCTATGAAGTTGTTGATGAAATTCCAATGAATAACACTACCCTT
GATGCAGCGAGTATTGAAGCTCTGAAACTCTGGGATTATGAGAAAAACGAAATCAAAAAT
TTGATTGCTCTTTCTATAAATGGAGAAATAATTTGGTATGAACTAAAAGATAAGAAATTA
ATTGAAAATAATCGCTGGTCTATTATGAAAAGAATTGATAGAATGTCTTATTTTCAACAT
GATGGTAGCGATTTAATGATGATAACAGTAATTGATGATCAAAACAGAGCAGAAGTGCAA
TTTATAGAATTCAATTTTTCAACAAAAGAATTTACACTTGTACAAGTTTTCAAATTGCCT
AATTTACCGAAAAGTATTGCTTGTTTGGATGTTGGAAAAGATTTGATTGTTGCATTTACT
CAAGAGTCACATATTAAAATTTATCGTCATCAAATCACAAAATTTGAGAAAGGAAAATTC
AGTTTACTTAAAACAATTGACACAGCAAATGTTAGTGTGATATCAGGCTTTCGTGTCGGT
GGCTATTCTTATTTAGCTATAGGAGGTGATCAACCACAAATTCTAAGATATTCTAATGGC
GATTTTGAACCACAATCTATTCTATCTCAAACTTTTGGGAATGTTGAAGAATTTTTACCT
ATACCGATAAAAATATACCGCGATGATATGGTTCTTTTAGTACAGCATCGAATCAAATTT
CGTTCACATTCTGTGATTGTTGTTGATGCATTGATTTGGAATGGTATTGCTTTTGAAAGT
GCACTGTCCATTCCATGTAAAGTTATCGCCAAACCGGATGCAGCAGGTTTTACTTGCATG
CTAGATTTTGAACGCGAAGAAGGTTTATTAGGAGCATCTTTTATATTAGAAGAAAAAAAT
AATTCATTCTATATTGTTATGCCACGTCATGAGGCACATAGTGGACTCTTTCGCATAAAT
TATGAAATAGTAGAAGCAGAAGATCCTTTAATAAAGGAGATGGAGCAAATCAAAAGAGCA
ATCGAATTAATTAATGAAATGATTGATAATGAAAATTCTTTAAAAGAACAAATAGATGAA
GTATTTAAGAGCTACATCAATCCCAAAGATGATTTTGATTTTGAAAATCTCGAAATTGAT
GAATTAAACACCGACATAATTCATTTTGATGGAAACGTATTGCTTGAAAGTGAAAGAATT
GAATTTCTCGATACATCATACACTCGTGAAGATTTTATTGCAAATTTGGATGAACTTGAA
AAGACGTTATTAGAAGATGAAGAAAAATTAAGGCAAATTAATGCAGATGTAAACAAAATC
ATTAGAAAGAATCGTCAAACAGAGAATCAAAATAATCTGGATGATTCACAAATATATTAT
TTTGGGCCATATGTTAATAATGGACAATTTGATGCAAAAACGATTAGAATTTTGCCGCAA
GATGAGCAACCGAAAAATGTTCGACGACAAAAGAGAGAAGATATCGATTCAATAGGTGAT
AAAATTATGAGTAACTTTCAAACAGAAAGACTTATTGTTGAGAAAATTAATGGAATTCCT
GTAAGTGATATTTTATTCTTGGAAAATGATGGAGAGTTACATGTGCCAAATAATAATATT
ATTTTTGATGAATCAATTCATGTCGAAAATGTTTCTCTTACTAATGATGGTCAAGTAAAT
GGAGTGGATTTAGGACGGGAAATTCTAGCGATCGATTCAAAATTCTTTCCAAAGAATTTA
ACATTTGAAAATGTTCAAATTGATCATTTAGAAATCAACAAATTAAATGAAATACCGGTG
GATATTGATTCATTACGAAACATTACAGTTGATATTCAAGATAAGTTACCATCATTGTCT
GCAAAGATAGCGAATATGCAGCAAAATTTAACAATAGAAACCATCAATGGAATTGATTGG
AAAGAGCTCACATCAAAATTAATTTCAAAAGTCTCAAATACAGATGTACACAATTTAACA
GTTAATGGAAATATTTGGATTGTTGATGATGAAAGTGAATTGAATATTGAAAAACTGAAT
TTTTTGTCGTTTCCTAATGAATACGTTTTAAAAGCTATGGGTCAAGAATCAACAGTAATA
ACTGGCAAAAAATCATTCAATGGAAATTTAGCATCGAGTGAAATTGACACGGGAGGAACA
ATAAATGGAATTAGTTCATTTGATATGATAACACTTGATCAAGAACAAACAATTTCAACA
GAAACAACTTTCAATGTTATGGAAGTAAATAAGAAACTTGAAGTTCATGGCACAATTGCT
GGACAGAAATTAGATGAGTTTTTACCAAATCCAACACTTGAATTTTCAAATGAAATTCCA
GCTGCATGTACTTTTAAAGAGCTCATTGTTGATGGTTTAGTGAAAATTGAAAATTCTTTC
AACAATAATGATTTAGAGACAATTTTATCTGATGTTGTTTATGAAGTCGATTCTAATGAT
GAAGAAGAAGTGTCAATAGAAGCTCCAAAAATTTTCAATGAAATTGATGTAAGTGAAGAT
GTTTTAATTCCAAGTAATTTCATAAATAATATAAAACTCGATAACATCATGACACTAAAT
GGTGAAGAGATTGCAACATTTGATAAACTATTTGGAAAAGTTTTATTTTCTGATTTAAAT
ATCGATGGTTTATTTGATGGAATCAATGTCACAGATTTAGATATGAACAGTATAAAAACA
TTTGGTGATCAATATATTCAAACACCAATTTTGATTTCAAAGCATGTTGATGCAAGTTCG
TTGGATATTAAACATTCACTGAACAAAATTCCTGCCAGTAATTTCTACTCTGTTAATGAA
CCAATTATTCTACCAGAAAATATGCAAGTTGCAATTCAAAATCTCACTGTGAGCAATTTA
ACTCTTAAAGATGATATTGTTGGAACGGGTGCTTTTGGTAATTTAGATTTAAATAATTTC
CCACTTTTCCATATGAGTAAAAGCATCGAACAGAATATTCAAGCACCAGTTAGCATTAAT
AGCCTGATAACAAAAAATGTATTTGAAGGAAATTCAATTAATGATATGAGCTTCAATGTA
TTTAAAGAATATATGAAAGGTTTGAAAGATTTCAAAAAATTACTTTTATCTGGCAATTAC
AAACTGGATAATTTGATAATTGATGGAAATGTAATACTTGAATCAATTAATGAAAAAGAT
TTTAATTCAATTGCAAATAATGTTATTTGGTTAAACAAACCAAATGAAATTGAAGCAAAG
ATTAAATTTTTGGATGGAATTGAAATTAATGAAAGACTCATTATTGATGGAAGAATAAAC
AACAAAAACTTTAGTGATTTTATCAATAATTGGATATCGTCAACTGAAAATCCCATAAAA
ATAAATGCTGATAAATTTATCAATAACGTACATGTTAGTTCAAATCTACAACTTTCCACA
ATCAATGAAATTAATTTCGAAGATATTTTAAAGAAAAGTGATATCATTGAGTCGGATAAA
TTGAATATTCATGGAATAGTAAAAGCTAACAAAATTATTGCCAAAAATTATTTCAATCAT
GAAAGTGTCAAAAATTTCGAAAATATTTACAAATTAAATTCATCAACCGGAGCTCTCACA
ATCAATGCAGATGTCAAATTTAATGGAAACCTTAAAGTTAAAAATTTGAACACGCCATTT
TTAAATCGAGATAATACTACAGAAATTTTTGAAAATATGGTTAAAAGAGATGATCCTGAA
ATTCATATAAAAGGTGCATTAAGTTTTGAAAAAGATGTGATGACAGAGCAAGGAGTTCAC
ATAGATAATTTTAATGATATTGATATGCAGAATTTGATGGCAAATCTGATTATATTAAGA
AGCTCGGAAATTAATAATATTTATAGCAATATAACGTTTATGAATGATGTGTTTGCACCA
CTTGTGGGTTTGAGAGGAAATTTGTCTACTGATTTGATTTCTACATGCAATATAACAGAA
TGGATACATCATGCAAAGAATATTAACCTAAACATTTTTCTACCAGGAAAATTCAAAGCT
GATTCGAGAATGATTAACGCATCAAATATCATCATTCGAAAATTAAATGGCATTTATTTC
GATCACATCTTTACACTTCATACTGATCAATCTTTCGATTATCGTTTCTATGTTAAAGAT
AGTGTACAAGTTAGAGAGCCTTTGATCGTAACTGGAAAAATAAATGAGAGAAATATTAAA
ATTGAGCGTGATAACACAGTTATGTTGAATGAAAAAGATCAAATAATTTTTACTGATTTG
ATTTTACCTGGTGCTAATGTTGTAAAGGGAGTCACTATAAATGGATTAGTTAATTCTAAA
GATATCAATAAAATTGCAACACTTGATTCATCACTTCTTTTGGATTCATCATTAGCATTT
TCGAGTTTAGAGGCAATATCTCTTATAAGTGAAGATCGCATTTCTGGAACAAATTTTACA
AAATGGTATGAGAATGTTGTTTGGAAAAATGGAAAAGATTTGCAAATTATTAATGGAAAT
TGGAAAATTGAAAAGATTCTTTTGAATGAAGATGTTATAGGAAATGGGCTCATTAATAAA
AGGTCAATCAACGAAATTGAGAAGAATTTAAAAATCAACGTTAATGCAATTCAAATGATA
ATAAGCAATTATTCTGAAGGATATCCAAATATGTGTAAAAAGTTACAATACAATGCTGAA
AATTTTGCACAAAAATCAATTTACGTATTAAAATATTTTGAGATTGATTTTAAAATAACT
GAATTACAAAAAATATTTTCCTATTTTGCATTTCAAACTGATTCCAAAAATTATCTTCTG
ATTAATACAAAATGCACAACTCAAATATATGAATGGAATAAATTTGACGAGAAATTTATT
CGTTTAGCTTCAGTTGAAACGGGCGTTATTTACAACTGGGTAAAATTAGAGTCTGATACA
AGTAAAAGAGGACGTGGAGGAGTGTTTATTATTACAAACTCAAAGATTAAAGCTGATGGT
TTGTGTGAGCATGGTGGTCTCAATTCGTGGAAATTTATTAATGACAAACTTGTACATATT
AAAACAATCTCAAGTGATGATGATGTAGTTGATTTACATGTTGATTCAACAAATATGAAT
AGTTTTTATGCTTTAACAAATGCAGATTATGTAATAAATCTTAATGCATTTGGTGTGATA
TTGCAACAATGGAAACTACCTACCGATAGTTCTTTATACAGATTCCTTCCATCAGGTCTT
CATTATGGTCTCAATCTGAGCAATGGTCGTAGAATAATTTCAATAAATATAAAAAATAAT
GCCAATTCACCATTTAGTCGTCAAAGAAGATTTTTATACAATGTAACAAAAACCGATTCG
ACAGAAAATGATTCGGTTATTTTTACTTTAAAAAGGCCAGAAATTTCTTTTAAAGATGAT
CGTAAAAATTCAATTCCTACAATTCCGTCAAAAACAATAAAGACATCTTCAAATCAAGTT
GATTTTATAACCAAAGTAAAGAAAGCAGGAGAAGTCATTCGAAGCAGTTTCAATATTAAA
AATGAAACTATCGATAACCTGAAATCAGCAGTTACAAAATCGAAATTTGATTTAAAACAA
ACAAATCCTTACAGCACTAATAAGCTTCTTTTTGTAATAAATTCACCCAATATTACAACT
TTCATGCAAAATATTTCTTCAACAATGAAACAGAGAATTTCATCAAATAATGAATTTTTT
GATAAATGGTTTAAGATCAATGATGGCAATAACACAATAGATAATTCAACAGATAATACT
ACAGATATTTTAACTGAATCTGAAACTCAAACAACAACATTACCGTCTGTAGAAATAACA
ACGTCAAATGAATTTACATTAACACCAAGAATACTTATGCCTCACGATGAGGATGAATTA
AGTTTACAACAAAACAGTTCTTCAAATGAAAATACGTCATTTGTTGTGAACTTAGAAAAT
GAGAGACTTATACATGCAGTTCCAATTCAAGGAAGTGGTATGAGTTATATGGAAAACAAT
TTTATTGGCGAAGTGACAGTATTATATGTTGGAGTAAACAATAATAAACGACCACTTTAT
GCTGTTAAAAAGGAGCGAGATTCTTTCATTAAGGGAAATAACTTTATTGAGATTTACAGT
GATATAATAGAAGGAAGAGTATTTCAATACATTCAATGCACAAATCCATCAAATATTGTA
GCTTTGCACTTCCGTGATGAAACTTTATTGGCTTTTATAGAAAGTCATAAAGAAGTTCAA
ATTTTCATCTATCGCGGCATCGAGGGCTTTACTTTCTTTAGAAAAATCTCTCTTCCAACT
GAAGTTTTTTTCATGTCTTCTCTAGTTCTACCACCTAAACTTAATTACAAATGTGACAAT
CACTATTTGGTTATGAAAACTGAAAAAGAATTGATATTTATGAGAGTTAAAATTGATGGA
AATTGTGGTATTCCTAAAGTAAAGTGTAATTTATAG

>g13406.t1 Gene=g13406 Length=2351
MLIKNSAIILWIIICLSSIKCEKSKLDEDERVETVDKLREELQQLNKLPDTTPRILSNQT
LIDINALKNEILKSPRINIEFSTNLTKMLKDAEHKKEPIVGVYIPSDEDDQFIEEKESNF
QNNPKLNESFQPNDDEIKLLTKLKHSESNMHNLYRENLVIRSIQEQFAFKIGTNVEEWKT
LLLEKEVALIGKSKNSIILAIGSEKIYEVVDEIPMNNTTLDAASIEALKLWDYEKNEIKN
LIALSINGEIIWYELKDKKLIENNRWSIMKRIDRMSYFQHDGSDLMMITVIDDQNRAEVQ
FIEFNFSTKEFTLVQVFKLPNLPKSIACLDVGKDLIVAFTQESHIKIYRHQITKFEKGKF
SLLKTIDTANVSVISGFRVGGYSYLAIGGDQPQILRYSNGDFEPQSILSQTFGNVEEFLP
IPIKIYRDDMVLLVQHRIKFRSHSVIVVDALIWNGIAFESALSIPCKVIAKPDAAGFTCM
LDFEREEGLLGASFILEEKNNSFYIVMPRHEAHSGLFRINYEIVEAEDPLIKEMEQIKRA
IELINEMIDNENSLKEQIDEVFKSYINPKDDFDFENLEIDELNTDIIHFDGNVLLESERI
EFLDTSYTREDFIANLDELEKTLLEDEEKLRQINADVNKIIRKNRQTENQNNLDDSQIYY
FGPYVNNGQFDAKTIRILPQDEQPKNVRRQKREDIDSIGDKIMSNFQTERLIVEKINGIP
VSDILFLENDGELHVPNNNIIFDESIHVENVSLTNDGQVNGVDLGREILAIDSKFFPKNL
TFENVQIDHLEINKLNEIPVDIDSLRNITVDIQDKLPSLSAKIANMQQNLTIETINGIDW
KELTSKLISKVSNTDVHNLTVNGNIWIVDDESELNIEKLNFLSFPNEYVLKAMGQESTVI
TGKKSFNGNLASSEIDTGGTINGISSFDMITLDQEQTISTETTFNVMEVNKKLEVHGTIA
GQKLDEFLPNPTLEFSNEIPAACTFKELIVDGLVKIENSFNNNDLETILSDVVYEVDSND
EEEVSIEAPKIFNEIDVSEDVLIPSNFINNIKLDNIMTLNGEEIATFDKLFGKVLFSDLN
IDGLFDGINVTDLDMNSIKTFGDQYIQTPILISKHVDASSLDIKHSLNKIPASNFYSVNE
PIILPENMQVAIQNLTVSNLTLKDDIVGTGAFGNLDLNNFPLFHMSKSIEQNIQAPVSIN
SLITKNVFEGNSINDMSFNVFKEYMKGLKDFKKLLLSGNYKLDNLIIDGNVILESINEKD
FNSIANNVIWLNKPNEIEAKIKFLDGIEINERLIIDGRINNKNFSDFINNWISSTENPIK
INADKFINNVHVSSNLQLSTINEINFEDILKKSDIIESDKLNIHGIVKANKIIAKNYFNH
ESVKNFENIYKLNSSTGALTINADVKFNGNLKVKNLNTPFLNRDNTTEIFENMVKRDDPE
IHIKGALSFEKDVMTEQGVHIDNFNDIDMQNLMANLIILRSSEINNIYSNITFMNDVFAP
LVGLRGNLSTDLISTCNITEWIHHAKNINLNIFLPGKFKADSRMINASNIIIRKLNGIYF
DHIFTLHTDQSFDYRFYVKDSVQVREPLIVTGKINERNIKIERDNTVMLNEKDQIIFTDL
ILPGANVVKGVTINGLVNSKDINKIATLDSSLLLDSSLAFSSLEAISLISEDRISGTNFT
KWYENVVWKNGKDLQIINGNWKIEKILLNEDVIGNGLINKRSINEIEKNLKINVNAIQMI
ISNYSEGYPNMCKKLQYNAENFAQKSIYVLKYFEIDFKITELQKIFSYFAFQTDSKNYLL
INTKCTTQIYEWNKFDEKFIRLASVETGVIYNWVKLESDTSKRGRGGVFIITNSKIKADG
LCEHGGLNSWKFINDKLVHIKTISSDDDVVDLHVDSTNMNSFYALTNADYVINLNAFGVI
LQQWKLPTDSSLYRFLPSGLHYGLNLSNGRRIISINIKNNANSPFSRQRRFLYNVTKTDS
TENDSVIFTLKRPEISFKDDRKNSIPTIPSKTIKTSSNQVDFITKVKKAGEVIRSSFNIK
NETIDNLKSAVTKSKFDLKQTNPYSTNKLLFVINSPNITTFMQNISSTMKQRISSNNEFF
DKWFKINDGNNTIDNSTDNTTDILTESETQTTTLPSVEITTSNEFTLTPRILMPHDEDEL
SLQQNSSSNENTSFVVNLENERLIHAVPIQGSGMSYMENNFIGEVTVLYVGVNNNKRPLY
AVKKERDSFIKGNNFIEIYSDIIEGRVFQYIQCTNPSNIVALHFRDETLLAFIESHKEVQ
IFIYRGIEGFTFFRKISLPTEVFFMSSLVLPPKLNYKCDNHYLVMKTEKELIFMRVKIDG
NCGIPKVKCNL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g13406.t1 Coils Coil Coil 28 48 -
7 g13406.t1 Coils Coil Coil 537 557 -
6 g13406.t1 Coils Coil Coil 609 650 -
2 g13406.t1 PANTHER PTHR22918 SEMINAL PLASMA PROTEIN 255 870 1.9E-72
1 g13406.t1 PANTHER PTHR22918 SEMINAL PLASMA PROTEIN 894 1365 1.9E-72
3 g13406.t1 PANTHER PTHR22918 SEMINAL PLASMA PROTEIN 1379 1619 1.9E-72
9 g13406.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 21 -
10 g13406.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 5 -
11 g13406.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 6 16 -
12 g13406.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 17 21 -
8 g13406.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 22 2351 -
4 g13406.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values