Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_1 | g13406 | g13406.t1 | TSS | g13406.t1 | 29872126 | 29872126 |
chr_1 | g13406 | g13406.t1 | isoform | g13406.t1 | 29872224 | 29879557 |
chr_1 | g13406 | g13406.t1 | exon | g13406.t1.exon1 | 29872224 | 29872298 |
chr_1 | g13406 | g13406.t1 | cds | g13406.t1.CDS1 | 29872224 | 29872298 |
chr_1 | g13406 | g13406.t1 | exon | g13406.t1.exon2 | 29872358 | 29875013 |
chr_1 | g13406 | g13406.t1 | cds | g13406.t1.CDS2 | 29872358 | 29875013 |
chr_1 | g13406 | g13406.t1 | exon | g13406.t1.exon3 | 29875069 | 29876943 |
chr_1 | g13406 | g13406.t1 | cds | g13406.t1.CDS3 | 29875069 | 29876943 |
chr_1 | g13406 | g13406.t1 | exon | g13406.t1.exon4 | 29877000 | 29877217 |
chr_1 | g13406 | g13406.t1 | cds | g13406.t1.CDS4 | 29877000 | 29877217 |
chr_1 | g13406 | g13406.t1 | exon | g13406.t1.exon5 | 29877269 | 29879155 |
chr_1 | g13406 | g13406.t1 | cds | g13406.t1.CDS5 | 29877269 | 29879155 |
chr_1 | g13406 | g13406.t1 | exon | g13406.t1.exon6 | 29879213 | 29879557 |
chr_1 | g13406 | g13406.t1 | cds | g13406.t1.CDS6 | 29879213 | 29879557 |
chr_1 | g13406 | g13406.t1 | TTS | g13406.t1 | NA | NA |
>g13406.t1 Gene=g13406 Length=7056
ATGTTAATTAAAAATAGTGCAATAATTTTATGGATAATTATTTGTTTGTCATCAATTAAA
TGTGAAAAATCAAAGCTTGATGAAGATGAGAGAGTAGAAACAGTTGATAAATTGCGTGAA
GAGCTTCAGCAATTAAATAAATTACCAGATACAACTCCAAGAATCTTAAGTAATCAAACA
TTGATCGATATAAATGCTTTGAAAAATGAAATTTTAAAATCACCTCGAATTAACATTGAA
TTCAGTACAAATCTAACAAAAATGTTAAAAGATGCAGAGCATAAAAAAGAGCCAATTGTA
GGTGTGTATATTCCTTCAGATGAAGATGATCAATTCATTGAAGAGAAAGAATCAAATTTT
CAGAATAACCCTAAATTAAATGAGAGTTTTCAACCTAATGATGACGAAATCAAGCTACTT
ACAAAGTTGAAGCATTCTGAAAGTAATATGCACAATTTATACAGAGAAAATCTTGTCATC
AGATCCATTCAAGAACAGTTTGCATTTAAAATTGGTACAAATGTCGAAGAATGGAAGACA
CTTTTACTTGAAAAAGAAGTTGCATTGATTGGAAAATCAAAAAATAGTATTATACTTGCA
ATCGGATCTGAGAAAATCTATGAAGTTGTTGATGAAATTCCAATGAATAACACTACCCTT
GATGCAGCGAGTATTGAAGCTCTGAAACTCTGGGATTATGAGAAAAACGAAATCAAAAAT
TTGATTGCTCTTTCTATAAATGGAGAAATAATTTGGTATGAACTAAAAGATAAGAAATTA
ATTGAAAATAATCGCTGGTCTATTATGAAAAGAATTGATAGAATGTCTTATTTTCAACAT
GATGGTAGCGATTTAATGATGATAACAGTAATTGATGATCAAAACAGAGCAGAAGTGCAA
TTTATAGAATTCAATTTTTCAACAAAAGAATTTACACTTGTACAAGTTTTCAAATTGCCT
AATTTACCGAAAAGTATTGCTTGTTTGGATGTTGGAAAAGATTTGATTGTTGCATTTACT
CAAGAGTCACATATTAAAATTTATCGTCATCAAATCACAAAATTTGAGAAAGGAAAATTC
AGTTTACTTAAAACAATTGACACAGCAAATGTTAGTGTGATATCAGGCTTTCGTGTCGGT
GGCTATTCTTATTTAGCTATAGGAGGTGATCAACCACAAATTCTAAGATATTCTAATGGC
GATTTTGAACCACAATCTATTCTATCTCAAACTTTTGGGAATGTTGAAGAATTTTTACCT
ATACCGATAAAAATATACCGCGATGATATGGTTCTTTTAGTACAGCATCGAATCAAATTT
CGTTCACATTCTGTGATTGTTGTTGATGCATTGATTTGGAATGGTATTGCTTTTGAAAGT
GCACTGTCCATTCCATGTAAAGTTATCGCCAAACCGGATGCAGCAGGTTTTACTTGCATG
CTAGATTTTGAACGCGAAGAAGGTTTATTAGGAGCATCTTTTATATTAGAAGAAAAAAAT
AATTCATTCTATATTGTTATGCCACGTCATGAGGCACATAGTGGACTCTTTCGCATAAAT
TATGAAATAGTAGAAGCAGAAGATCCTTTAATAAAGGAGATGGAGCAAATCAAAAGAGCA
ATCGAATTAATTAATGAAATGATTGATAATGAAAATTCTTTAAAAGAACAAATAGATGAA
GTATTTAAGAGCTACATCAATCCCAAAGATGATTTTGATTTTGAAAATCTCGAAATTGAT
GAATTAAACACCGACATAATTCATTTTGATGGAAACGTATTGCTTGAAAGTGAAAGAATT
GAATTTCTCGATACATCATACACTCGTGAAGATTTTATTGCAAATTTGGATGAACTTGAA
AAGACGTTATTAGAAGATGAAGAAAAATTAAGGCAAATTAATGCAGATGTAAACAAAATC
ATTAGAAAGAATCGTCAAACAGAGAATCAAAATAATCTGGATGATTCACAAATATATTAT
TTTGGGCCATATGTTAATAATGGACAATTTGATGCAAAAACGATTAGAATTTTGCCGCAA
GATGAGCAACCGAAAAATGTTCGACGACAAAAGAGAGAAGATATCGATTCAATAGGTGAT
AAAATTATGAGTAACTTTCAAACAGAAAGACTTATTGTTGAGAAAATTAATGGAATTCCT
GTAAGTGATATTTTATTCTTGGAAAATGATGGAGAGTTACATGTGCCAAATAATAATATT
ATTTTTGATGAATCAATTCATGTCGAAAATGTTTCTCTTACTAATGATGGTCAAGTAAAT
GGAGTGGATTTAGGACGGGAAATTCTAGCGATCGATTCAAAATTCTTTCCAAAGAATTTA
ACATTTGAAAATGTTCAAATTGATCATTTAGAAATCAACAAATTAAATGAAATACCGGTG
GATATTGATTCATTACGAAACATTACAGTTGATATTCAAGATAAGTTACCATCATTGTCT
GCAAAGATAGCGAATATGCAGCAAAATTTAACAATAGAAACCATCAATGGAATTGATTGG
AAAGAGCTCACATCAAAATTAATTTCAAAAGTCTCAAATACAGATGTACACAATTTAACA
GTTAATGGAAATATTTGGATTGTTGATGATGAAAGTGAATTGAATATTGAAAAACTGAAT
TTTTTGTCGTTTCCTAATGAATACGTTTTAAAAGCTATGGGTCAAGAATCAACAGTAATA
ACTGGCAAAAAATCATTCAATGGAAATTTAGCATCGAGTGAAATTGACACGGGAGGAACA
ATAAATGGAATTAGTTCATTTGATATGATAACACTTGATCAAGAACAAACAATTTCAACA
GAAACAACTTTCAATGTTATGGAAGTAAATAAGAAACTTGAAGTTCATGGCACAATTGCT
GGACAGAAATTAGATGAGTTTTTACCAAATCCAACACTTGAATTTTCAAATGAAATTCCA
GCTGCATGTACTTTTAAAGAGCTCATTGTTGATGGTTTAGTGAAAATTGAAAATTCTTTC
AACAATAATGATTTAGAGACAATTTTATCTGATGTTGTTTATGAAGTCGATTCTAATGAT
GAAGAAGAAGTGTCAATAGAAGCTCCAAAAATTTTCAATGAAATTGATGTAAGTGAAGAT
GTTTTAATTCCAAGTAATTTCATAAATAATATAAAACTCGATAACATCATGACACTAAAT
GGTGAAGAGATTGCAACATTTGATAAACTATTTGGAAAAGTTTTATTTTCTGATTTAAAT
ATCGATGGTTTATTTGATGGAATCAATGTCACAGATTTAGATATGAACAGTATAAAAACA
TTTGGTGATCAATATATTCAAACACCAATTTTGATTTCAAAGCATGTTGATGCAAGTTCG
TTGGATATTAAACATTCACTGAACAAAATTCCTGCCAGTAATTTCTACTCTGTTAATGAA
CCAATTATTCTACCAGAAAATATGCAAGTTGCAATTCAAAATCTCACTGTGAGCAATTTA
ACTCTTAAAGATGATATTGTTGGAACGGGTGCTTTTGGTAATTTAGATTTAAATAATTTC
CCACTTTTCCATATGAGTAAAAGCATCGAACAGAATATTCAAGCACCAGTTAGCATTAAT
AGCCTGATAACAAAAAATGTATTTGAAGGAAATTCAATTAATGATATGAGCTTCAATGTA
TTTAAAGAATATATGAAAGGTTTGAAAGATTTCAAAAAATTACTTTTATCTGGCAATTAC
AAACTGGATAATTTGATAATTGATGGAAATGTAATACTTGAATCAATTAATGAAAAAGAT
TTTAATTCAATTGCAAATAATGTTATTTGGTTAAACAAACCAAATGAAATTGAAGCAAAG
ATTAAATTTTTGGATGGAATTGAAATTAATGAAAGACTCATTATTGATGGAAGAATAAAC
AACAAAAACTTTAGTGATTTTATCAATAATTGGATATCGTCAACTGAAAATCCCATAAAA
ATAAATGCTGATAAATTTATCAATAACGTACATGTTAGTTCAAATCTACAACTTTCCACA
ATCAATGAAATTAATTTCGAAGATATTTTAAAGAAAAGTGATATCATTGAGTCGGATAAA
TTGAATATTCATGGAATAGTAAAAGCTAACAAAATTATTGCCAAAAATTATTTCAATCAT
GAAAGTGTCAAAAATTTCGAAAATATTTACAAATTAAATTCATCAACCGGAGCTCTCACA
ATCAATGCAGATGTCAAATTTAATGGAAACCTTAAAGTTAAAAATTTGAACACGCCATTT
TTAAATCGAGATAATACTACAGAAATTTTTGAAAATATGGTTAAAAGAGATGATCCTGAA
ATTCATATAAAAGGTGCATTAAGTTTTGAAAAAGATGTGATGACAGAGCAAGGAGTTCAC
ATAGATAATTTTAATGATATTGATATGCAGAATTTGATGGCAAATCTGATTATATTAAGA
AGCTCGGAAATTAATAATATTTATAGCAATATAACGTTTATGAATGATGTGTTTGCACCA
CTTGTGGGTTTGAGAGGAAATTTGTCTACTGATTTGATTTCTACATGCAATATAACAGAA
TGGATACATCATGCAAAGAATATTAACCTAAACATTTTTCTACCAGGAAAATTCAAAGCT
GATTCGAGAATGATTAACGCATCAAATATCATCATTCGAAAATTAAATGGCATTTATTTC
GATCACATCTTTACACTTCATACTGATCAATCTTTCGATTATCGTTTCTATGTTAAAGAT
AGTGTACAAGTTAGAGAGCCTTTGATCGTAACTGGAAAAATAAATGAGAGAAATATTAAA
ATTGAGCGTGATAACACAGTTATGTTGAATGAAAAAGATCAAATAATTTTTACTGATTTG
ATTTTACCTGGTGCTAATGTTGTAAAGGGAGTCACTATAAATGGATTAGTTAATTCTAAA
GATATCAATAAAATTGCAACACTTGATTCATCACTTCTTTTGGATTCATCATTAGCATTT
TCGAGTTTAGAGGCAATATCTCTTATAAGTGAAGATCGCATTTCTGGAACAAATTTTACA
AAATGGTATGAGAATGTTGTTTGGAAAAATGGAAAAGATTTGCAAATTATTAATGGAAAT
TGGAAAATTGAAAAGATTCTTTTGAATGAAGATGTTATAGGAAATGGGCTCATTAATAAA
AGGTCAATCAACGAAATTGAGAAGAATTTAAAAATCAACGTTAATGCAATTCAAATGATA
ATAAGCAATTATTCTGAAGGATATCCAAATATGTGTAAAAAGTTACAATACAATGCTGAA
AATTTTGCACAAAAATCAATTTACGTATTAAAATATTTTGAGATTGATTTTAAAATAACT
GAATTACAAAAAATATTTTCCTATTTTGCATTTCAAACTGATTCCAAAAATTATCTTCTG
ATTAATACAAAATGCACAACTCAAATATATGAATGGAATAAATTTGACGAGAAATTTATT
CGTTTAGCTTCAGTTGAAACGGGCGTTATTTACAACTGGGTAAAATTAGAGTCTGATACA
AGTAAAAGAGGACGTGGAGGAGTGTTTATTATTACAAACTCAAAGATTAAAGCTGATGGT
TTGTGTGAGCATGGTGGTCTCAATTCGTGGAAATTTATTAATGACAAACTTGTACATATT
AAAACAATCTCAAGTGATGATGATGTAGTTGATTTACATGTTGATTCAACAAATATGAAT
AGTTTTTATGCTTTAACAAATGCAGATTATGTAATAAATCTTAATGCATTTGGTGTGATA
TTGCAACAATGGAAACTACCTACCGATAGTTCTTTATACAGATTCCTTCCATCAGGTCTT
CATTATGGTCTCAATCTGAGCAATGGTCGTAGAATAATTTCAATAAATATAAAAAATAAT
GCCAATTCACCATTTAGTCGTCAAAGAAGATTTTTATACAATGTAACAAAAACCGATTCG
ACAGAAAATGATTCGGTTATTTTTACTTTAAAAAGGCCAGAAATTTCTTTTAAAGATGAT
CGTAAAAATTCAATTCCTACAATTCCGTCAAAAACAATAAAGACATCTTCAAATCAAGTT
GATTTTATAACCAAAGTAAAGAAAGCAGGAGAAGTCATTCGAAGCAGTTTCAATATTAAA
AATGAAACTATCGATAACCTGAAATCAGCAGTTACAAAATCGAAATTTGATTTAAAACAA
ACAAATCCTTACAGCACTAATAAGCTTCTTTTTGTAATAAATTCACCCAATATTACAACT
TTCATGCAAAATATTTCTTCAACAATGAAACAGAGAATTTCATCAAATAATGAATTTTTT
GATAAATGGTTTAAGATCAATGATGGCAATAACACAATAGATAATTCAACAGATAATACT
ACAGATATTTTAACTGAATCTGAAACTCAAACAACAACATTACCGTCTGTAGAAATAACA
ACGTCAAATGAATTTACATTAACACCAAGAATACTTATGCCTCACGATGAGGATGAATTA
AGTTTACAACAAAACAGTTCTTCAAATGAAAATACGTCATTTGTTGTGAACTTAGAAAAT
GAGAGACTTATACATGCAGTTCCAATTCAAGGAAGTGGTATGAGTTATATGGAAAACAAT
TTTATTGGCGAAGTGACAGTATTATATGTTGGAGTAAACAATAATAAACGACCACTTTAT
GCTGTTAAAAAGGAGCGAGATTCTTTCATTAAGGGAAATAACTTTATTGAGATTTACAGT
GATATAATAGAAGGAAGAGTATTTCAATACATTCAATGCACAAATCCATCAAATATTGTA
GCTTTGCACTTCCGTGATGAAACTTTATTGGCTTTTATAGAAAGTCATAAAGAAGTTCAA
ATTTTCATCTATCGCGGCATCGAGGGCTTTACTTTCTTTAGAAAAATCTCTCTTCCAACT
GAAGTTTTTTTCATGTCTTCTCTAGTTCTACCACCTAAACTTAATTACAAATGTGACAAT
CACTATTTGGTTATGAAAACTGAAAAAGAATTGATATTTATGAGAGTTAAAATTGATGGA
AATTGTGGTATTCCTAAAGTAAAGTGTAATTTATAG
>g13406.t1 Gene=g13406 Length=2351
MLIKNSAIILWIIICLSSIKCEKSKLDEDERVETVDKLREELQQLNKLPDTTPRILSNQT
LIDINALKNEILKSPRINIEFSTNLTKMLKDAEHKKEPIVGVYIPSDEDDQFIEEKESNF
QNNPKLNESFQPNDDEIKLLTKLKHSESNMHNLYRENLVIRSIQEQFAFKIGTNVEEWKT
LLLEKEVALIGKSKNSIILAIGSEKIYEVVDEIPMNNTTLDAASIEALKLWDYEKNEIKN
LIALSINGEIIWYELKDKKLIENNRWSIMKRIDRMSYFQHDGSDLMMITVIDDQNRAEVQ
FIEFNFSTKEFTLVQVFKLPNLPKSIACLDVGKDLIVAFTQESHIKIYRHQITKFEKGKF
SLLKTIDTANVSVISGFRVGGYSYLAIGGDQPQILRYSNGDFEPQSILSQTFGNVEEFLP
IPIKIYRDDMVLLVQHRIKFRSHSVIVVDALIWNGIAFESALSIPCKVIAKPDAAGFTCM
LDFEREEGLLGASFILEEKNNSFYIVMPRHEAHSGLFRINYEIVEAEDPLIKEMEQIKRA
IELINEMIDNENSLKEQIDEVFKSYINPKDDFDFENLEIDELNTDIIHFDGNVLLESERI
EFLDTSYTREDFIANLDELEKTLLEDEEKLRQINADVNKIIRKNRQTENQNNLDDSQIYY
FGPYVNNGQFDAKTIRILPQDEQPKNVRRQKREDIDSIGDKIMSNFQTERLIVEKINGIP
VSDILFLENDGELHVPNNNIIFDESIHVENVSLTNDGQVNGVDLGREILAIDSKFFPKNL
TFENVQIDHLEINKLNEIPVDIDSLRNITVDIQDKLPSLSAKIANMQQNLTIETINGIDW
KELTSKLISKVSNTDVHNLTVNGNIWIVDDESELNIEKLNFLSFPNEYVLKAMGQESTVI
TGKKSFNGNLASSEIDTGGTINGISSFDMITLDQEQTISTETTFNVMEVNKKLEVHGTIA
GQKLDEFLPNPTLEFSNEIPAACTFKELIVDGLVKIENSFNNNDLETILSDVVYEVDSND
EEEVSIEAPKIFNEIDVSEDVLIPSNFINNIKLDNIMTLNGEEIATFDKLFGKVLFSDLN
IDGLFDGINVTDLDMNSIKTFGDQYIQTPILISKHVDASSLDIKHSLNKIPASNFYSVNE
PIILPENMQVAIQNLTVSNLTLKDDIVGTGAFGNLDLNNFPLFHMSKSIEQNIQAPVSIN
SLITKNVFEGNSINDMSFNVFKEYMKGLKDFKKLLLSGNYKLDNLIIDGNVILESINEKD
FNSIANNVIWLNKPNEIEAKIKFLDGIEINERLIIDGRINNKNFSDFINNWISSTENPIK
INADKFINNVHVSSNLQLSTINEINFEDILKKSDIIESDKLNIHGIVKANKIIAKNYFNH
ESVKNFENIYKLNSSTGALTINADVKFNGNLKVKNLNTPFLNRDNTTEIFENMVKRDDPE
IHIKGALSFEKDVMTEQGVHIDNFNDIDMQNLMANLIILRSSEINNIYSNITFMNDVFAP
LVGLRGNLSTDLISTCNITEWIHHAKNINLNIFLPGKFKADSRMINASNIIIRKLNGIYF
DHIFTLHTDQSFDYRFYVKDSVQVREPLIVTGKINERNIKIERDNTVMLNEKDQIIFTDL
ILPGANVVKGVTINGLVNSKDINKIATLDSSLLLDSSLAFSSLEAISLISEDRISGTNFT
KWYENVVWKNGKDLQIINGNWKIEKILLNEDVIGNGLINKRSINEIEKNLKINVNAIQMI
ISNYSEGYPNMCKKLQYNAENFAQKSIYVLKYFEIDFKITELQKIFSYFAFQTDSKNYLL
INTKCTTQIYEWNKFDEKFIRLASVETGVIYNWVKLESDTSKRGRGGVFIITNSKIKADG
LCEHGGLNSWKFINDKLVHIKTISSDDDVVDLHVDSTNMNSFYALTNADYVINLNAFGVI
LQQWKLPTDSSLYRFLPSGLHYGLNLSNGRRIISINIKNNANSPFSRQRRFLYNVTKTDS
TENDSVIFTLKRPEISFKDDRKNSIPTIPSKTIKTSSNQVDFITKVKKAGEVIRSSFNIK
NETIDNLKSAVTKSKFDLKQTNPYSTNKLLFVINSPNITTFMQNISSTMKQRISSNNEFF
DKWFKINDGNNTIDNSTDNTTDILTESETQTTTLPSVEITTSNEFTLTPRILMPHDEDEL
SLQQNSSSNENTSFVVNLENERLIHAVPIQGSGMSYMENNFIGEVTVLYVGVNNNKRPLY
AVKKERDSFIKGNNFIEIYSDIIEGRVFQYIQCTNPSNIVALHFRDETLLAFIESHKEVQ
IFIYRGIEGFTFFRKISLPTEVFFMSSLVLPPKLNYKCDNHYLVMKTEKELIFMRVKIDG
NCGIPKVKCNL
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
5 | g13406.t1 | Coils | Coil | Coil | 28 | 48 | - |
7 | g13406.t1 | Coils | Coil | Coil | 537 | 557 | - |
6 | g13406.t1 | Coils | Coil | Coil | 609 | 650 | - |
2 | g13406.t1 | PANTHER | PTHR22918 | SEMINAL PLASMA PROTEIN | 255 | 870 | 1.9E-72 |
1 | g13406.t1 | PANTHER | PTHR22918 | SEMINAL PLASMA PROTEIN | 894 | 1365 | 1.9E-72 |
3 | g13406.t1 | PANTHER | PTHR22918 | SEMINAL PLASMA PROTEIN | 1379 | 1619 | 1.9E-72 |
9 | g13406.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
10 | g13406.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
11 | g13406.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 16 | - |
12 | g13406.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 21 | - |
8 | g13406.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 2351 | - |
4 | g13406.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
There are no GO annotations for this transcript.
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.