General information for g13544.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13544 is located on chr_1: 30799991..30801963 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13544 | g13544.t1 | isoform | g13544.t1 | 30799991 | 30801963 |
| chr_1 | g13544 | g13544.t1 | exon | g13544.t1.exon1 | 30799991 | 30801647 |
| chr_1 | g13544 | g13544.t1 | cds | g13544.t1.CDS1 | 30799991 | 30801647 |
| chr_1 | g13544 | g13544.t1 | exon | g13544.t1.exon2 | 30801710 | 30801963 |
| chr_1 | g13544 | g13544.t1 | cds | g13544.t1.CDS2 | 30801710 | 30801963 |
| chr_1 | g13544 | g13544.t1 | TSS | g13544.t1 | NA | NA |
| chr_1 | g13544 | g13544.t1 | TTS | g13544.t1 | NA | NA |
Sequences
>g13544.t1 Gene=g13544 Length=1911
ATGGAAAACTTGATAAATTTTGAAGAGAACGACAACAATAATAAAGAGAGGTCATCTAAC
GAAATTTTGGCAAAAAATCCTGCTATTAATCATCCTCTTCTCATCAATAGTCGTCTTAGT
TTTGAATTGAATAATCCATTTGATAAACTGGAGTATAAAGTTACGCATTCGCAAGATCCA
TTTGAATGTTTAGAAATGGCAAATAATAGCGCAAAAACAAATGGTGAGAATAATCAAGAT
CAAAATTCAATAACTTCATCAGAAAGTGATCAAACAAAGGACACTATAAAGATAACACGA
AATGAAAATTCATTGAATTCTTCGGCAATTTCTGTATCATCATCAAGTAGCAATAAAAGT
CAAGTTACTCGATGTCTTTCTGATTCAGGTGCAAGTACTATGTCAAATAATGATGGAAAC
ATGAGTCGTTTCAGTTCTATGGACAATATTTTGAGCAAAAAGCAAAATCAGCTTTTAAAA
TTGAGCTTGCTTAATTCTCCTAATTCTCCATTACATTCCTCATCATTTAATACTTCTCGT
ACACCAGATTCAGTTTTCTTAGAAGCCAAGAAAATATCAGAAAAATTGAATAATTTAAAT
GAACTCTCTTTTGAAGATCTTAATAATATAAGTCAACAACTAGTTGATGCATCTAGTTGC
TCCATTAATTTGAATGATACCGATTTAGATCAATTGAAAATTTCATTTTTGGAAAAGAAT
CCTTCTGAAACATCACCGCCACCACAACCAGATGATCATAACGAAGACAATAAAGACATG
ATAAAGGATAAAATTCAAAATCTTCAAGAAAAGCTCAAGATGATCAAGAAAGGAGAACCA
ATTGAACATAAGCCGAAAATTGAGCCATTATCACCAAAAGAGTCAAAAGTTTTCAAAACA
AACTCTGAAGTGGAAGTTGACGATATTCTGCAAAGAATCAAAACACTTATGAAAGATAAT
AAGAGAGATGAAGCGAAAGAACAATTACAATTACTTAATCAAATGTTAACACCTTCTGCA
AATCATTTACAAGCATCTCAACCTTATGTTCGTCAAGACACATTTGAAATAGATAAAACA
ACAGGATCAAGAAGATATTCTTGTTCTGCAGCTAATGATAGTCACAATAACTCAAATGAT
TTAATGGAACAATTGGCAAAACTTCTTGGCGCACAAAGTTTGGATGTAAGTTCTCTAAAT
TTATCTGGATCAAATAATAATGTCGTAGTGATAGTACCTAAGATGCCTTCGCCAATGGCC
ACTCCTATGAAACATAATAATCCAACAAGAAGAAGTGTATCATTTAGTACTCAACGCCCA
ACAAATTCGACACGTGGAATTGAAAATAAAAAGTTGTCAACACCTATGAAACACACAGCA
ACTAATTTATCTGCTACTGCAACCCGAAGAAGTGCATTTACTGCACCGCGTTCAGTAACA
AAGCCTTCAAATTCACATGAACAAAAGTTGAATATAGGAACTGTGCGAAAATCATTAATA
GGATCAATGGATAAAAGTCCTTCGAAACAAAAATCCCCACCACTTAAAAGAAATATCACA
ACAGCGCCACCACGAGCGACTGCAGTACGACGTTCTGTCTCATTAAAAGCAAATGTTCCA
TCTGTAACTGTGAGTCAGGCGACACCAAAAAAATCAACATCAACAAATTTGTCAGTAAAT
CATCCATCAGCTGTTCGAACATCGTCAACACCTACACCATCTCGAAGATTGTCAACTGCT
CCCATCACTTCTCGAGCATCAACAGCAGCTTCAAGTAAGCCAAGTATCAATCAAAAACGT
CCAGTAGCAACACAAAAGACTGAATTTAGAACTCCATACGGCACAGTAACTTCAACTTCA
AAAGCTTCAAGCAATAAAGGAGCACACAATAAAGGAGGAAGTCTTGTTTAA
>g13544.t1 Gene=g13544 Length=636
MENLINFEENDNNNKERSSNEILAKNPAINHPLLINSRLSFELNNPFDKLEYKVTHSQDP
FECLEMANNSAKTNGENNQDQNSITSSESDQTKDTIKITRNENSLNSSAISVSSSSSNKS
QVTRCLSDSGASTMSNNDGNMSRFSSMDNILSKKQNQLLKLSLLNSPNSPLHSSSFNTSR
TPDSVFLEAKKISEKLNNLNELSFEDLNNISQQLVDASSCSINLNDTDLDQLKISFLEKN
PSETSPPPQPDDHNEDNKDMIKDKIQNLQEKLKMIKKGEPIEHKPKIEPLSPKESKVFKT
NSEVEVDDILQRIKTLMKDNKRDEAKEQLQLLNQMLTPSANHLQASQPYVRQDTFEIDKT
TGSRRYSCSAANDSHNNSNDLMEQLAKLLGAQSLDVSSLNLSGSNNNVVVIVPKMPSPMA
TPMKHNNPTRRSVSFSTQRPTNSTRGIENKKLSTPMKHTATNLSATATRRSAFTAPRSVT
KPSNSHEQKLNIGTVRKSLIGSMDKSPSKQKSPPLKRNITTAPPRATAVRRSVSLKANVP
SVTVSQATPKKSTSTNLSVNHPSAVRTSSTPTPSRRLSTAPITSRASTAASSKPSINQKR
PVATQKTEFRTPYGTVTSTSKASSNKGAHNKGGSLV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g13544.t1 | Coils | Coil | Coil | 258 | 278 | - |
| 1 | g13544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 94 | - |
| 2 | g13544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 140 | - |
| 4 | g13544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 492 | - |
| 6 | g13544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 527 | - |
| 5 | g13544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 517 | - |
| 3 | g13544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 636 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
