General information for g13577.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13577 is located on chr_1: 31024054..31025811 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13577 | g13577.t1 | isoform | g13577.t1 | 31024054 | 31025811 |
| chr_1 | g13577 | g13577.t1 | exon | g13577.t1.exon1 | 31024054 | 31025811 |
| chr_1 | g13577 | g13577.t1 | cds | g13577.t1.CDS1 | 31024054 | 31025811 |
| chr_1 | g13577 | g13577.t1 | TSS | g13577.t1 | NA | NA |
| chr_1 | g13577 | g13577.t1 | TTS | g13577.t1 | NA | NA |
Sequences
>g13577.t1 Gene=g13577 Length=1758
ATGGAAGTCATTGATAAAATTGTTAAAAGTGATTTAAAAATGGAAATTTCAAGCATAAAC
TTAATAACAACAAAGAAAAGTCATAAAGAAAAGCTTTTATCGAAAATTATTGAGAAATTG
TCAAAAGAAAAGTCTGTGATAATTTTAAATGAAGAAAGTTTGAATAAATTAAAAATAGAA
AAATTAATGTTCAATATTTTTATCATAAAATCTTTGGAAGGTTTCAAAAATTTAAGCAAA
AAGATTACAAACAAAAAATTCAATTATGGTGGATATTACGTAATAATTTTTGAAAATGGA
ACTAAAGAAGATTCTCATGAGATTTTCACATTACTTTGGGAATTCTACATCCATAACATA
AATTTATTAAGAAGAGAAAATAATACAATAATTGTTGAAACATTCATTCCATTTCAACCA
TCAAAATGCAATCAAACGGAACCAGTTGAAATTGCAAAATATAAAAATGGAAAATTTATC
ACAAAACCTGAAAATTTCTTTCCTCAAAAGTTCAAAAACTTTCATCGTTGTCCAATAAAA
ATTCCATCATTTGAAAGTTCAACACCAGCAATTTTAAAAAGAGTTTTGCCAGACGGGACC
ATTGAGCATTATGGTAGAGATGTAACAAATTATAGAACATTGGCTGAAAAACTAAATTTG
ACACTTTCAATTAAATTTCTCAATCAGTATGGTTCATGGGGTTCAATTTTATCGAATGGG
ACTGTTACTGGAGCGATCGGTTTAGTATCTCGAAAAGAAGCCGATTTTACACTTGGAAAT
TTACTTTTAAAATATGAAAGAACACAAATTATGGATTATAGTAATAGCTACTTTCTCAAT
TCTATTGTTTGGATTATTCCTAAAGGTGAGCCACTTTCATCATTTCGAAAACTCATTCGA
CCTTTTGACTTTTGGGTTTGGGTGTTTTTAATTGTAACAATTTTCATTGGTGGAATTACG
GTTTTGTTGATTTTATATCAATCAATTTCCATCAAAGAATTCGTTTTTGGTGAAGGAGTA
AACACACCATTTATGAATATTTTGCTCGCATTATTTGGAGTTGCTCAACATAAGCTACCA
AAGAGAAATTTCGCTAGATTTCTTCTTATGTCTTTTATGCTTTTCTGCTTAGTTATAAGA
TCACTTTATCAAGGATCAGTTTTTCAATTTTTACAAGCAAGCGATCGAGAACCAGAAGTT
GCATCTGTAGAGGAAATGGTCAAAAAAGGCTTCACATTTTACATGCATTCTTCTTATGAT
GAATACACAAGAGAAAATATATTAATGAAAAATCATCGAAAAATAATTCAGCCAAGTGAA
ATGAATGTTATCATGAATAAAACACTTGAAGAAGGATTCAAAGGAACTTTGCTTGTCTCT
ATCTTAGATGCTTTATATAAAAATAAATTGAGAGCAGCAAAACATGAAGAATTACTTGCA
GTTTGTAAAGAATTTTACATGATGACTCACATTAGTGTTTATTTTCCTAAAAATAGTTAC
CTCGTTGAGCCAATTGATGAACTTTTGATAAATTTTCAAAGTGCTGGCTTGCTTGATTTT
TGGTCATCAAATGAAATAAGTTATAAATTTTTAATATACAATGATGAATCAAATGAATTA
AAACCAATGTCAATACAGCATTTTTCTTCAACTTTTCAAATTTGGATGATTTCATGTTGT
GTTGCTTTTGTTGTGTTTTTCCTTGAGCTTTTTTGGAAATTTTTCAAAACGTTTAAGAAA
ATTAAAAATCAAATATGA
>g13577.t1 Gene=g13577 Length=585
MEVIDKIVKSDLKMEISSINLITTKKSHKEKLLSKIIEKLSKEKSVIILNEESLNKLKIE
KLMFNIFIIKSLEGFKNLSKKITNKKFNYGGYYVIIFENGTKEDSHEIFTLLWEFYIHNI
NLLRRENNTIIVETFIPFQPSKCNQTEPVEIAKYKNGKFITKPENFFPQKFKNFHRCPIK
IPSFESSTPAILKRVLPDGTIEHYGRDVTNYRTLAEKLNLTLSIKFLNQYGSWGSILSNG
TVTGAIGLVSRKEADFTLGNLLLKYERTQIMDYSNSYFLNSIVWIIPKGEPLSSFRKLIR
PFDFWVWVFLIVTIFIGGITVLLILYQSISIKEFVFGEGVNTPFMNILLALFGVAQHKLP
KRNFARFLLMSFMLFCLVIRSLYQGSVFQFLQASDREPEVASVEEMVKKGFTFYMHSSYD
EYTRENILMKNHRKIIQPSEMNVIMNKTLEEGFKGTLLVSILDALYKNKLRAAKHEELLA
VCKEFYMMTHISVYFPKNSYLVEPIDELLINFQSAGLLDFWSSNEISYKFLIYNDESNEL
KPMSIQHFSSTFQIWMISCCVAFVVFFLELFWKFFKTFKKIKNQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g13577.t1 | Gene3D | G3DSA:3.40.190.10 | - | 213 | 541 | 5.1E-45 |
| 8 | g13577.t1 | Gene3D | G3DSA:3.40.190.10 | - | 281 | 491 | 5.1E-45 |
| 7 | g13577.t1 | Gene3D | G3DSA:1.10.287.70 | - | 291 | 569 | 5.1E-45 |
| 1 | g13577.t1 | PANTHER | PTHR42643:SF16 | IONOTROPIC RECEPTOR 11A-RELATED | 86 | 577 | 1.2E-66 |
| 2 | g13577.t1 | PANTHER | PTHR42643 | IONOTROPIC RECEPTOR 20A-RELATED | 86 | 577 | 1.2E-66 |
| 11 | g13577.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 303 | - |
| 15 | g13577.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 304 | 329 | - |
| 14 | g13577.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 330 | 334 | - |
| 18 | g13577.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 335 | 355 | - |
| 10 | g13577.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 356 | 366 | - |
| 17 | g13577.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 367 | 383 | - |
| 13 | g13577.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 384 | 551 | - |
| 16 | g13577.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 552 | 572 | - |
| 12 | g13577.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 573 | 585 | - |
| 6 | g13577.t1 | SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 197 | 521 | 3.06E-20 |
| 4 | g13577.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 304 | 326 | - |
| 3 | g13577.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 364 | 383 | - |
| 5 | g13577.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 553 | 575 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed