General information for g13579.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13579 is located on chr_1: 31028876..31035996 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13579 | g13579.t1 | isoform | g13579.t1 | 31028876 | 31035996 |
| chr_1 | g13579 | g13579.t1 | exon | g13579.t1.exon1 | 31028876 | 31029256 |
| chr_1 | g13579 | g13579.t1 | cds | g13579.t1.CDS1 | 31028876 | 31029256 |
| chr_1 | g13579 | g13579.t1 | exon | g13579.t1.exon2 | 31029311 | 31030076 |
| chr_1 | g13579 | g13579.t1 | cds | g13579.t1.CDS2 | 31029311 | 31030076 |
| chr_1 | g13579 | g13579.t1 | exon | g13579.t1.exon3 | 31030141 | 31030845 |
| chr_1 | g13579 | g13579.t1 | cds | g13579.t1.CDS3 | 31030141 | 31030845 |
| chr_1 | g13579 | g13579.t1 | exon | g13579.t1.exon4 | 31031902 | 31032095 |
| chr_1 | g13579 | g13579.t1 | cds | g13579.t1.CDS4 | 31031902 | 31032095 |
| chr_1 | g13579 | g13579.t1 | exon | g13579.t1.exon5 | 31032154 | 31033622 |
| chr_1 | g13579 | g13579.t1 | cds | g13579.t1.CDS5 | 31032154 | 31033622 |
| chr_1 | g13579 | g13579.t1 | exon | g13579.t1.exon6 | 31034196 | 31034421 |
| chr_1 | g13579 | g13579.t1 | cds | g13579.t1.CDS6 | 31034196 | 31034421 |
| chr_1 | g13579 | g13579.t1 | exon | g13579.t1.exon7 | 31034479 | 31035996 |
| chr_1 | g13579 | g13579.t1 | cds | g13579.t1.CDS7 | 31034479 | 31035996 |
| chr_1 | g13579 | g13579.t1 | TSS | g13579.t1 | NA | NA |
| chr_1 | g13579 | g13579.t1 | TTS | g13579.t1 | NA | NA |
Sequences
>g13579.t1 Gene=g13579 Length=5259
ATGATAAAGAATCTTTTCTTAATTTTGTTACTTTTAAAAGTAGTAAAAGTTCAAGAAAAT
GAAGACATTGTTAAAATTATTGATAAAATTTTTAAAAGTGATTTGAGCATGGAGCTTCCA
AGTATAAATTTAATAACAACAGAGAAAAGTTATAAAGAAAAGCTATCATCAAAAATTATT
GAAAAATTGTCTAAGAAAAAGTCTATGATGATTTTAAATGAAGAAAGTTTGAATAAATTA
AAAATAGAAAAATTAATGTTCAATATTTTTATCATAAAATCATTGGAAGGTTTCAAGAAT
TTAAGCAAAAAGATTACAAACAAAAAATTCAATTATGGTGGATATTACGTAATAATTTTT
GAAAATGGAACTAAAGAAGATTCTCATGAGATTTTCACATTACTTTGGGAATTCTACATC
CATAACATAAATTTATTAAGAAAAGAAAATAATACAATAATTGTTGAAACATTCATTCCA
TTTCAACCATCAAAATGCAATCAAACAGAACCAGTTGAAATTGCAAAATATAAAAATGGA
AAATTTATCACAAAACCTGAAAATTTCTTTCCTCTAAAGTTCAAAAACTTCCATCGTTGT
CCAATAAAAGTTACTACGTTTGGAAGTCTTGCACCATCAGTTCTTAGAAATAATTTTCCA
AATGGTTCATATGAGCTTTATGGACGTGATGTTAAAGTATTCAGAGCACTAGAAAAGGAA
TTCAATTTTTATGCCAATGTCACTTATTTAACAAAATATGGTTCGTGGGGAATAATTTTT
GAAAATGGAACAGTCACAGGAGCAATGGGTCATGCAACTAGACGCGAGGCAGATTTTGCT
CTTGGAAATTTGTTTTTGAAACTTGAAAGAGTTTTAATTATGGGTTATAGTTTTGGTTAC
TATTTAGAAACCTTGGTTTTTGCTATTCCAAAAGGTGAACCCTATTCATCATTTCACAAA
CTTTTGCGACCATTCGACAATATTGTTTGGATTATCACGCTTGTATTAATAATAGTCACA
TTTTTTATTATCATTTTTCTCAATTTCCAATCAAACAAAATTAAGAACTTTATTTTTGGA
GAAGGAATTAAACATCCAACATTGAATGTTGTACAAGCTTTGTTTGGTTTGAGCCAACAT
AAATTACCAACAGGAGATTTTGCTCGTTTTCTTCTCATGACATTTTTAATATTTTGCTTG
ATTATTCGATCGCTCTATCAAGGATCACTTTATCAATTTCTTCAACTAAGCGATAACCAA
CCTAAAGTTTCATCAATCGAAGAAATGGCAGAGAAAAATTATACATTTTATTTAATTGCA
TCATTCGATGATATGACAAAAGATCATCAAATTATGAAATATAACCGTAAAGTTATTGCA
CCTTCTGAATTTTATACAATTATGAACAACACATTGCGTCCAAATTTTCAAGGATCTAAC
ATAATTCCATTTTCAGAGCTTCTTTATAAAAATAAAATGAGAGCGTTGAGCAATGAAGAT
TTATACACAATGTGCAAACAAATATTCACAATGATTCCAATAAGCATTTATTATCCAAAA
GACAGCTATTTAGTGACTACATTTGATGATTTACTGATTTGGTTTCAAAGTTCTGGATTG
ATTTCTTATTGGGCATCACAAGAAATGGACTACAAATATCTTTCTTATAATTCAGATTTA
GATGGACCAAAAGTGATGTCGATTGAACATTTGTCAGGCACTTTTCAGATATGGATCTTT
TTATCAATAGAAAGTTATGAATTTGTAGAAATTATTGATGAAATTGTTAAAACTGATTTG
AAAATCGAAATTTCAAACATAAATTTGATAATAACAGAGACAGTTTATGAAGAAAAGCTT
TTATCAAAAATTATTGAGAAATTGTCAAAAGAAAAGTCTGTGATGATTTTAAATGAAGAA
AGTTTGAATAAATTAAAAATCGAAAAATTAATGTTCAATATTTTTATCATAAAATCATTG
GAAGGTTTCAAGAATTTAAGCAAAAAGATTACAAACAAAAAATTTAATTATGGTGGATAT
TACGTAATAATTTTTGAAAACGGAACTAAAGAAGATTCTCATGAGATTTTCACATTACTT
TGGGAATTCTACATTCATAACATAAATTTATTGAGAAGAGAAAATAATACAATTATTGTT
GAAACATTCATTCCATTTCAACCATCAAAATGCAATCAAACGGAACCAGTTGAAATTGCA
AAATATAAAAATGGAAAATTCATCACAAAACCTGGAAACTTCTTCCCTCAAAAATATGAA
AATTTCCACAAATGTCCACTAAAAATCACAACTTTTGCGAGTCTTGCACCATCAGTTCTT
AGAAATGATTTTCCAAATGGTTCATATGAGCTTTATGGACGTGATGTTAAAGTATTCAGA
GCACTAGAAAAGGAATTCAATTTTTATGCCAATGTCACTTATTTAACAAAATATGGTTCG
TGGGGAATAATTTTTGAAAATGGAACAGTCACAGGTGCAATGGGTCAAGCAACTAGACGC
GAGGCAGATTTTGCTCTTGGAAATTTGAACTTGAAACTTGATCGAGCACTCATCATGGGT
TATAGTTTTGGTTATTACTTAGAAACTTTAGTCTTTGTGATTCCGAAAGGTGAACCCTAT
TCTTCTTTTCACAAACTTTTGCGGCCATTTGAGAATGCTGTTTGGATAGCGATGCTTGTT
TTGATTCTTCTCACATTCATCATTATTATTTTACTTACATTCCAACCAGAAAGAATCAAA
AATTTTGTAATTGGTGTTGGAATTAATCATCCAAGTTTAAACGTTCTCCAAGTTTTGTTT
GGTTTGAGCCAACATAAATTACCATCAAGAAACTTCGCTCGATTTTTGTTAATGACATTT
TTAATATTTTGTCTGGTTATTCGATCGCTTTATCAAGGATCGCTCTATCAATTTCTTCAA
CTAAGTGATAACCAACCTGAAGTTTCATCAATCGAAGAAATGGCAGAAAGAGGTTACACT
TTTTACATGATTGCATCTTATGATGATATGACAAAAGATAACGCAGCCATGAAGAACAGA
CGAAAAATTATTCCACCATCTGAACTTTACACAATTATGAACAGCACGATACGCCCAAAT
TTTCACGGTTCCAACATTATAGCATTTTCTGAAGTACTTTACAAAAACAAATTAAGAGCG
AGAAGTAAAGAAGATTTATACACAGTGTGCAAACAAATATTCACAATGATTCCAATAAGC
ATTTATTATCCAAAAGACAGCTATTTAGTGACTACATTTGATGATTTATTGATTTGGTTT
CAAAGTTCTGGATTGATTTCTTATTGGGCATCACAAGAAATGGACTACAAATATCTTTCT
TATAATTCAGATTTAGATGGACCAAAAGTGATGTCGATTGAACATTTTGACATTGTTGAA
GTTACTTCTGAAATTATTGAATCTGCATTTCATCAACGGCAAGTAACTGCAGTAACTTTC
ATTGATGCAACTTTAAAGAAATCACTTGAAATTCACGATTTTATAAATGAATTATTAACG
AAAATTGGAAGTCAACATATTTATGAGAGAATAAATTTACAAATTATTAAAACTGCGAAA
TTTACAAAACGATTAAACTCTAATGTGATCATAATCAGTTCAATGAATGAGTTTCGAAAT
TTCACAAAGATTTTGACACATAAGATTTTCAATTATGGTGGTTACTACATAATTTTGTTC
AAAAATGCAACTCACAATGAAGCACATGAAATTTTTCAAACTCTTTGGGATTTTTACATT
TACAATTTGAATTTGATCAGAAATGTCAATGATTCGGTTGTTGTTGAAACTTTTATTCCA
TTTCAATTAGGAAAATGTAATAAAACAGATCCAGTTGTTATAGCAAATTATCAAAATGGC
AAATTCAAACTAAAATCAGATGACTTTTTTCCTCTGAAATTTCAAAATTTTTACAAATGT
CCTTTGAAATTCACCACTTATGAAAGTTTAGCTCCTTCGGTTATAAGAAACGATTTTCCA
AATGGTACATTACATCTTCATGGTAGAGATGTTGATACTTACACGACACTGTCTGAAACT
TTAAATTTTAAACTTGACATGTTTTACATTGCTGAATACGGAGGATGGGGCTATTACAAT
CAAAATGGTACAGTGACTGGAGGAATGGCAAGAGCAATAAGAAGAGAGACTGAATTTATT
TTGGGCAATAATAATTTGAAATACGATAGAGCATTAGCAATGTCTCATACTTATGGTTAT
TATTTAGAAACTTTAGTTTTTATGCTTCCACCAGCTGAAGAATTGAGTTCGTTTCATAAA
TTGATTCAACCTTTTGATAATTATGTTTGGAGCTGCATAATTTTTATTTTGATAGTTGCA
ATTATTGTGATTGGCATTCTAGAATATCAATCAATTAAAGTTAGAAGTTTTGTGTATGGC
AAAAATATCAAAAATCCTTACATGAATATTTTAATAGCAATCGTTGGTGGAAGTCAAGTA
AAATTACCAAAAAGAAATTTTTCTCGTTCACTTCTGATGATGTTTTTGCTATTTTGCATT
ATTATAAGATCAAGTTATCAAGGTGCACTTTATAAAGCATTACAACAAAATGATCTCATT
CCTGAACCACAAAATGTTGAAGAAATTGCAGAAAGAAATTTGACATTTTATGTGTTAGTT
TCATGGGATGAATTGACAATTAACAATTCTGCAATTCGTAATAGAAGAAAAATGATTCAA
CCATTAGAATTACAACGCATGATGAATGATACACTCAAAAAAGATTTTAATGGAGCTCTT
ATGACTGTCCTATCAGAAGTACTTTATCGAAATAAGCTAAGGTCATTGCAAGGAATGGAA
TTGTTTAAAGTTTGCAAGCAATTTTATACAATGATTCCAATTGTCATGTATATGCCTAAA
AATAGTTATCTCGTTGATCCTTTCAATATGAAACTCTTGTGGTTTGAATCTGCTGGTCTT
ATTACTTGGTGGCAATCGAATTATGGTGATATGACTTATTTAGCTGATCCAACTGATTTT
CTAGGACCTAAAAGCCTCAAAATTAGTCATTTATCAGCAACTTTTCAAATTTATCTTTGC
TGTTGTCTCACTGGGTTTATTATTTTCATTTTTGAACTTATCTTTAACCAGAAGCGAGTT
GATTTCATTAGAAAAAAACTTGGCATTAAAAGACATAAGAAGAAAATTGTGATGAAAAAA
CTCAAACCATTGCTTAAATCAAAAACTTTGAAATGGTAA
>g13579.t1 Gene=g13579 Length=1752
MIKNLFLILLLLKVVKVQENEDIVKIIDKIFKSDLSMELPSINLITTEKSYKEKLSSKII
EKLSKKKSMMILNEESLNKLKIEKLMFNIFIIKSLEGFKNLSKKITNKKFNYGGYYVIIF
ENGTKEDSHEIFTLLWEFYIHNINLLRKENNTIIVETFIPFQPSKCNQTEPVEIAKYKNG
KFITKPENFFPLKFKNFHRCPIKVTTFGSLAPSVLRNNFPNGSYELYGRDVKVFRALEKE
FNFYANVTYLTKYGSWGIIFENGTVTGAMGHATRREADFALGNLFLKLERVLIMGYSFGY
YLETLVFAIPKGEPYSSFHKLLRPFDNIVWIITLVLIIVTFFIIIFLNFQSNKIKNFIFG
EGIKHPTLNVVQALFGLSQHKLPTGDFARFLLMTFLIFCLIIRSLYQGSLYQFLQLSDNQ
PKVSSIEEMAEKNYTFYLIASFDDMTKDHQIMKYNRKVIAPSEFYTIMNNTLRPNFQGSN
IIPFSELLYKNKMRALSNEDLYTMCKQIFTMIPISIYYPKDSYLVTTFDDLLIWFQSSGL
ISYWASQEMDYKYLSYNSDLDGPKVMSIEHLSGTFQIWIFLSIESYEFVEIIDEIVKTDL
KIEISNINLIITETVYEEKLLSKIIEKLSKEKSVMILNEESLNKLKIEKLMFNIFIIKSL
EGFKNLSKKITNKKFNYGGYYVIIFENGTKEDSHEIFTLLWEFYIHNINLLRRENNTIIV
ETFIPFQPSKCNQTEPVEIAKYKNGKFITKPGNFFPQKYENFHKCPLKITTFASLAPSVL
RNDFPNGSYELYGRDVKVFRALEKEFNFYANVTYLTKYGSWGIIFENGTVTGAMGQATRR
EADFALGNLNLKLDRALIMGYSFGYYLETLVFVIPKGEPYSSFHKLLRPFENAVWIAMLV
LILLTFIIIILLTFQPERIKNFVIGVGINHPSLNVLQVLFGLSQHKLPSRNFARFLLMTF
LIFCLVIRSLYQGSLYQFLQLSDNQPEVSSIEEMAERGYTFYMIASYDDMTKDNAAMKNR
RKIIPPSELYTIMNSTIRPNFHGSNIIAFSEVLYKNKLRARSKEDLYTVCKQIFTMIPIS
IYYPKDSYLVTTFDDLLIWFQSSGLISYWASQEMDYKYLSYNSDLDGPKVMSIEHFDIVE
VTSEIIESAFHQRQVTAVTFIDATLKKSLEIHDFINELLTKIGSQHIYERINLQIIKTAK
FTKRLNSNVIIISSMNEFRNFTKILTHKIFNYGGYYIILFKNATHNEAHEIFQTLWDFYI
YNLNLIRNVNDSVVVETFIPFQLGKCNKTDPVVIANYQNGKFKLKSDDFFPLKFQNFYKC
PLKFTTYESLAPSVIRNDFPNGTLHLHGRDVDTYTTLSETLNFKLDMFYIAEYGGWGYYN
QNGTVTGGMARAIRRETEFILGNNNLKYDRALAMSHTYGYYLETLVFMLPPAEELSSFHK
LIQPFDNYVWSCIIFILIVAIIVIGILEYQSIKVRSFVYGKNIKNPYMNILIAIVGGSQV
KLPKRNFSRSLLMMFLLFCIIIRSSYQGALYKALQQNDLIPEPQNVEEIAERNLTFYVLV
SWDELTINNSAIRNRRKMIQPLELQRMMNDTLKKDFNGALMTVLSEVLYRNKLRSLQGME
LFKVCKQFYTMIPIVMYMPKNSYLVDPFNMKLLWFESAGLITWWQSNYGDMTYLADPTDF
LGPKSLKISHLSATFQIYLCCCLTGFIIFIFELIFNQKRVDFIRKKLGIKRHKKKIVMKK
LKPLLKSKTLKW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 22 | g13579.t1 | Gene3D | G3DSA:3.40.190.10 | - | 227 | 564 | 2.8E-33 |
| 27 | g13579.t1 | Gene3D | G3DSA:3.40.190.10 | - | 304 | 514 | 2.8E-33 |
| 20 | g13579.t1 | Gene3D | G3DSA:1.10.287.70 | - | 314 | 580 | 2.8E-33 |
| 24 | g13579.t1 | Gene3D | G3DSA:3.40.190.10 | - | 792 | 1115 | 5.3E-35 |
| 23 | g13579.t1 | Gene3D | G3DSA:3.40.190.10 | - | 869 | 1079 | 5.3E-35 |
| 19 | g13579.t1 | Gene3D | G3DSA:1.10.287.70 | - | 879 | 985 | 5.3E-35 |
| 26 | g13579.t1 | Gene3D | G3DSA:3.40.190.10 | - | 1348 | 1684 | 1.2E-33 |
| 25 | g13579.t1 | Gene3D | G3DSA:3.40.190.10 | - | 1424 | 1634 | 1.2E-33 |
| 21 | g13579.t1 | Gene3D | G3DSA:1.10.287.70 | - | 1434 | 1712 | 1.2E-33 |
| 4 | g13579.t1 | PANTHER | PTHR42643:SF16 | IONOTROPIC RECEPTOR 11A-RELATED | 83 | 580 | 2.7E-190 |
| 7 | g13579.t1 | PANTHER | PTHR42643 | IONOTROPIC RECEPTOR 20A-RELATED | 83 | 580 | 2.7E-190 |
| 3 | g13579.t1 | PANTHER | PTHR42643:SF16 | IONOTROPIC RECEPTOR 11A-RELATED | 675 | 1136 | 2.7E-190 |
| 6 | g13579.t1 | PANTHER | PTHR42643 | IONOTROPIC RECEPTOR 20A-RELATED | 675 | 1136 | 2.7E-190 |
| 2 | g13579.t1 | PANTHER | PTHR42643:SF16 | IONOTROPIC RECEPTOR 11A-RELATED | 1197 | 1717 | 2.7E-190 |
| 5 | g13579.t1 | PANTHER | PTHR42643 | IONOTROPIC RECEPTOR 20A-RELATED | 1197 | 1717 | 2.7E-190 |
| 1 | g13579.t1 | Pfam | PF00060 | Ligand-gated ion channel | 329 | 552 | 9.4E-8 |
| 38 | g13579.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 39 | g13579.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 40 | g13579.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 12 | - |
| 50 | g13579.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 17 | - |
| 34 | g13579.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 290 | - |
| 42 | g13579.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 291 | 309 | - |
| 32 | g13579.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 310 | 328 | - |
| 45 | g13579.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 329 | 349 | - |
| 37 | g13579.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 350 | 386 | - |
| 44 | g13579.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 387 | 406 | - |
| 31 | g13579.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 407 | 855 | - |
| 49 | g13579.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 856 | 874 | - |
| 33 | g13579.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 875 | 893 | - |
| 48 | g13579.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 894 | 914 | - |
| 28 | g13579.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 915 | 951 | - |
| 43 | g13579.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 952 | 971 | - |
| 36 | g13579.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 972 | 1447 | - |
| 41 | g13579.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1448 | 1467 | - |
| 30 | g13579.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1468 | 1510 | - |
| 47 | g13579.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1511 | 1531 | - |
| 35 | g13579.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1532 | 1694 | - |
| 46 | g13579.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1695 | 1715 | - |
| 29 | g13579.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1716 | 1752 | - |
| 16 | g13579.t1 | SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 198 | 545 | 1.3E-17 |
| 17 | g13579.t1 | SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 763 | 1110 | 1.88E-17 |
| 15 | g13579.t1 | SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 1319 | 1668 | 2.51E-11 |
| 18 | g13579.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
| 12 | g13579.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 327 | 349 | - |
| 11 | g13579.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 387 | 406 | - |
| 10 | g13579.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 892 | 914 | - |
| 9 | g13579.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 952 | 971 | - |
| 8 | g13579.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1447 | 1469 | - |
| 14 | g13579.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1507 | 1526 | - |
| 13 | g13579.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1693 | 1715 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0015276 | ligand-gated ion channel activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed