General information for g13610.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g13610 is located on chr_1: 31285230..31287452 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13610 | g13610.t1 | TTS | g13610.t1 | 31285100 | 31285100 |
| chr_1 | g13610 | g13610.t1 | isoform | g13610.t1 | 31285230 | 31287452 |
| chr_1 | g13610 | g13610.t1 | exon | g13610.t1.exon1 | 31285230 | 31285314 |
| chr_1 | g13610 | g13610.t1 | cds | g13610.t1.CDS1 | 31285230 | 31285314 |
| chr_1 | g13610 | g13610.t1 | exon | g13610.t1.exon2 | 31285445 | 31285570 |
| chr_1 | g13610 | g13610.t1 | cds | g13610.t1.CDS2 | 31285445 | 31285570 |
| chr_1 | g13610 | g13610.t1 | exon | g13610.t1.exon3 | 31285643 | 31285774 |
| chr_1 | g13610 | g13610.t1 | cds | g13610.t1.CDS3 | 31285643 | 31285774 |
| chr_1 | g13610 | g13610.t1 | exon | g13610.t1.exon4 | 31285834 | 31286783 |
| chr_1 | g13610 | g13610.t1 | cds | g13610.t1.CDS4 | 31285834 | 31286783 |
| chr_1 | g13610 | g13610.t1 | exon | g13610.t1.exon5 | 31287252 | 31287452 |
| chr_1 | g13610 | g13610.t1 | cds | g13610.t1.CDS5 | 31287252 | 31287452 |
| chr_1 | g13610 | g13610.t1 | TSS | g13610.t1 | 31287505 | 31287505 |
Sequences
>g13610.t1 Gene=g13610 Length=1494
ATGGCAGAAAAGTTAAATTCAGTTCAAGAATTTTATAAAAATAAAACGATTTTTATCACT
GGTAGTTCAGGATTTATGGGAAAGGTTTTCATAGAAAAACTTCTTTACTCGTGTTCTGAT
TTAAAACAATTAATTCTCTTGATGCGTCCTAAGAGAGGAAAAAGTCAATTGGAAAGAATA
AAAGAATTTGAAAAGTTGCCTCTTTTTGAGAGAATAATGAAAGAGAAGTCAGAAGTGATG
AAGAAAATTTTCATTGTGTCAGGTGAAATTACGGAGCCAAATTTAGGAATGAGCAAAGAG
AATTTGCAGTATGTCATCGATAACACGAATATAATTTTCCACTTGGCAGCTTCCTTGAAA
TTAGAAGCAACAGTTCGTCCAAATATTTGCATGAATTTGATAGCAACGAAAGAAGTTTTG
GATATTGCAAAAAATGTGAAAAAATTGGCAGTTATGGTTCATGTATCGACAGCATTTTGC
AATGTTGAGAAAGTTACAGTTGATGAAGTAGTTTATGATACGCCTGAAAAGCCGATGGAC
GTGATTAATACAGCAAAATGGATGGATGATGATTTCATGGCTTCATTTCAGAAGCAACTT
TTGGGAATTCATCCGAATAGTTATACTTATTCGAAACGTCTTGCTGAAGTTCTTGTTCGT
GATGAATATAATGAAACTAAATTGCCACTTTGTATTGTACGACCGAGTGTCGTTGGGGCA
AGTTATAGTGAACCAGTAAAAGGTTGGATTGATACATTGAATGGCCCTGGTGGTGTAGTG
TTAGCAGGTGGCAAAGGAGTTTTGAGATGTTTATTAATTGATGATTCAGCAATTTTTAAT
GCCATTCCTGTTGATTATGCAATCAATTCTTTCATAATGATTGCTAAAGAAATTGGAACA
CAGAAGGAAAGAGCTTCAAAAGTTCCTGTTTACAATGTCACAATTCATAAATCTGTCGCT
AAATCATACAGACATATGATGGATGCATGTGAAAGTATGAGATATGTTTTCCCTAGTTCA
ATGATGCTTTGGTATCCAAATATTACACTTACAAAGAACAAATATTATTACATGTTCAAT
GTGATTCTTTTTCAATGGATTCCTGCAATCTTCATTGATTTGTTGTTTATGATTTTCGGA
CAAAAAAGATTCATGATTCATGTGCAAAAGAAAATTGCAGTTGGAATGGACGTTTTAAAG
TGTTTTACACTTAATAATTGGGATTTTAGGACGAAGAATTTTGAACATCTCACTGAAATA
CAGTCAAAAGATGAATATGAAATGTTCTTTGTTGACACAAAGAAAATTGATATTAATCAA
TATTACAAGGATTCATTAGCTGGTGGTAGAGTTTATAAAGATAAAGATCCATTATCAACT
ATTCCAAAAGCTATTAGGCTTATGAAAATTTTGTATGTCTTGGATCGATCAGTCAAAATA
ATTTTCTTTTACTTTGTAATAAAGAAACTTTTGACATTGACAGGACTTTTATAA
>g13610.t1 Gene=g13610 Length=497
MAEKLNSVQEFYKNKTIFITGSSGFMGKVFIEKLLYSCSDLKQLILLMRPKRGKSQLERI
KEFEKLPLFERIMKEKSEVMKKIFIVSGEITEPNLGMSKENLQYVIDNTNIIFHLAASLK
LEATVRPNICMNLIATKEVLDIAKNVKKLAVMVHVSTAFCNVEKVTVDEVVYDTPEKPMD
VINTAKWMDDDFMASFQKQLLGIHPNSYTYSKRLAEVLVRDEYNETKLPLCIVRPSVVGA
SYSEPVKGWIDTLNGPGGVVLAGGKGVLRCLLIDDSAIFNAIPVDYAINSFIMIAKEIGT
QKERASKVPVYNVTIHKSVAKSYRHMMDACESMRYVFPSSMMLWYPNITLTKNKYYYMFN
VILFQWIPAIFIDLLFMIFGQKRFMIHVQKKIAVGMDVLKCFTLNNWDFRTKNFEHLTEI
QSKDEYEMFFVDTKKIDINQYYKDSLAGGRVYKDKDPLSTIPKAIRLMKILYVLDRSVKI
IFFYFVIKKLLTLTGLL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g13610.t1 | CDD | cd05236 | FAR-N_SDR_e | 15 | 314 | 5.03975E-105 |
| 14 | g13610.t1 | CDD | cd09071 | FAR_C | 363 | 452 | 8.22275E-25 |
| 7 | g13610.t1 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 349 | 6.6E-59 |
| 3 | g13610.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 3 | 489 | 2.6E-173 |
| 4 | g13610.t1 | PANTHER | PTHR11011:SF12 | FATTY ACYL-COA REDUCTASE | 3 | 489 | 2.6E-173 |
| 1 | g13610.t1 | Pfam | PF07993 | Male sterility protein | 19 | 290 | 3.4E-66 |
| 2 | g13610.t1 | Pfam | PF03015 | Male sterility protein | 364 | 452 | 3.7E-22 |
| 10 | g13610.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 354 | - |
| 12 | g13610.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 355 | 380 | - |
| 8 | g13610.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 381 | 469 | - |
| 11 | g13610.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 470 | 487 | - |
| 9 | g13610.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 488 | 497 | - |
| 6 | g13610.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 7 | 294 | 3.11E-24 |
| 5 | g13610.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 357 | 379 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed