General information for g13637.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peptide transporter family 1.
Parent gene
- The parent gene g13637 is located on chr_1: 31375416..31376878 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13637 | g13637.t4 | TSS | g13637.t4 | 31373914 | 31373914 |
| chr_1 | g13637 | g13637.t4 | isoform | g13637.t4 | 31374010 | 31376878 |
| chr_1 | g13637 | g13637.t4 | exon | g13637.t4.exon1 | 31374010 | 31374037 |
| chr_1 | g13637 | g13637.t4 | exon | g13637.t4.exon2 | 31374468 | 31374828 |
| chr_1 | g13637 | g13637.t4 | exon | g13637.t4.exon3 | 31374891 | 31375246 |
| chr_1 | g13637 | g13637.t4 | exon | g13637.t4.exon4 | 31375312 | 31376385 |
| chr_1 | g13637 | g13637.t4 | cds | g13637.t4.CDS1 | 31375513 | 31376385 |
| chr_1 | g13637 | g13637.t4 | exon | g13637.t4.exon5 | 31376447 | 31376529 |
| chr_1 | g13637 | g13637.t4 | cds | g13637.t4.CDS2 | 31376447 | 31376529 |
| chr_1 | g13637 | g13637.t4 | exon | g13637.t4.exon6 | 31376583 | 31376626 |
| chr_1 | g13637 | g13637.t4 | cds | g13637.t4.CDS3 | 31376583 | 31376626 |
| chr_1 | g13637 | g13637.t4 | exon | g13637.t4.exon7 | 31376685 | 31376878 |
| chr_1 | g13637 | g13637.t4 | cds | g13637.t4.CDS4 | 31376685 | 31376878 |
| chr_1 | g13637 | g13637.t4 | TTS | g13637.t4 | NA | NA |
Sequences
>g13637.t4 Gene=g13637 Length=2140
ATGTCAGAAAACGATAATAAAAATGAAACTCAACTTGAGGAGAAGCGAAAAGATGTTGAA
CAAAGTCAAGTCAAACTTAAATATCCTCGTGCAATTCCATTCATTATTAGCAATGAATTT
TGCGAGCGTTTCAATTTCTATGGAATGAAAGCCATTTTGGTACTCTTTTTGACAAGAAAG
TTGATGTATGATGATGACATTTCGACAATTATTTACCATACTTTCAATTGTCTCGTCTAT
TTCTTCTGCATCTTTGGAGCAATCATTGCTGATTCATGGTGGGGTAAATTCAATACGATT
CTCTATTTGTCGATTGTCTATGTTATCGGAAGTGGTACTATGGCGTTAGCTGCGGTCGAG
CCTTGGATTGCTATAGATCCCGGTGCAAGAGCTTTAACAATTACTGGATTGTTTTTAATT
GCATTGGGTAGTGGTGGAATTAAACCTTGTGTTGCTGCATTTGGAGGAGAACAATTTAAA
ATGCCAGAGCAAGCTAAACAATTGGCAACCTTCTTCTCGCTCTTTTATTTCTCTATAAAT
GCCGGATCTTTAATTTCAACATCTGTCACTCCAATTTTAAGAGAAGATATTCCATGTTTT
GGTATGGATGATTGTTTCCCACTTGCTTTTGGTGTACCTGCTATTTTGATGGTTGTTGCA
ATTTTATTCTTCTTATTCGGTAAATTTTTATACAAAATTCTACCAAACCAGGGCAATATG
TTAGTCAAAGTGTGCAAATGCATTGAATGCAATTAGCACAAGAAAACATGAAAAACAAAC
TAGTCCACGTGAACATTGGCTTGATTATGGTGAAACAAAATATGGTCGAAAACTTGTCCT
TGAAACTAAAATTCTTCTTAACATCCTTGTACTTTATTTACCGTTGCCATTTTTCTGGGC
ACTTTTCGATCAACAAGGTTCACGTTGGACATTCCAAGCAACTCGCATGGATGGCGATAT
TGGCTTTTACACAATCAAACCTGATCAAATGCAAGTCGTAAATCCATTACTCATTCTTAT
TTTCATTCCACTCTACGAAGTCGCATTTTATCCACTTCTCAATCTTATCGGAATTCGGCG
ACCACTTCAAAAGTTGACATTAGGCGGTATTTTTGCTGGTGTTGCTTTCGTCATTTCAGC
TATTGTTGAGATTAATTTGGAACCAACATACGCTGTGCTTCCTGATTGGGGACAAGCTCA
GTTGAGATTTTATAATGGAAGAAATTGCAATTATAGAATCACTACAAATATTCCTGGTCA
TACAACGATCAATGTGGCTGCATACGAATATTGGGAGGAAAAATTCATTGATATCAATAA
TGGACGTCAATTCTTTTCATACAGTTTTAGTTCAACATCAAATGGTTGCACCGGTGATAC
AAATACAGGTGTTTGGCATGTTGAAGAGCGCACTGCAAAAAGTTTCTTCTTGACTGGAAC
TAATAATCTTGCTTTACATGAATTTGAAGACAGTACTGAGAAATCAAGACGTGGTTGGCC
CTTTATCACTGTTCTTGCCAATTTACAAACAAATAATACCAATATTAGACTTTTGGAAGA
TGGCAAAAATGAAAGATATAATGAACCACCTACATTTATGAATCAAACTGATATTCAAGC
AAATAAAAACTATGAAATTTTTGTTGGTAATACACGGGTTGCAAATGACGTTCATTTGGC
TTTAGGTGGTGTTTATTCTTTGATGATTACTCAAACATCAGCTTCAGGTTATAATGTTAA
ACTTGTTACTGTTACTGATCCCAATTCGGTTAGTATGTTATGGTTGATACCACAATATGT
CATTATGACACTTGGTGAAGTCATGTTTTCAGTCACGGGTTTGGAATTTTCATTTACACA
AGCACCAGAGAGTATGAAATCTGTTATTCAAGGATGCTGGATGTTGACTGTTGCGTTTGG
AAACTTGATTGTTGTCATTATCACTGGCGCGAAATTCTTTGATTCACAAACTTATGAGTT
CTTCTTGTTTGCTGGTTTGATGTTTGTTGATATGATTCTCTTCAGTTGGCTTGCATATCG
TTACAAAGCTATTCCATTGGAACTTTTGCAAGATATTGATGAGAACAAGGATGAAAAGAA
ACCAGCGTTGGAATTTAACAATAACACAACCGAAAATTAA
>g13637.t4 Gene=g13637 Length=397
MDGDIGFYTIKPDQMQVVNPLLILIFIPLYEVAFYPLLNLIGIRRPLQKLTLGGIFAGVA
FVISAIVEINLEPTYAVLPDWGQAQLRFYNGRNCNYRITTNIPGHTTINVAAYEYWEEKF
IDINNGRQFFSYSFSSTSNGCTGDTNTGVWHVEERTAKSFFLTGTNNLALHEFEDSTEKS
RRGWPFITVLANLQTNNTNIRLLEDGKNERYNEPPTFMNQTDIQANKNYEIFVGNTRVAN
DVHLALGGVYSLMITQTSASGYNVKLVTVTDPNSVSMLWLIPQYVIMTLGEVMFSVTGLE
FSFTQAPESMKSVIQGCWMLTVAFGNLIVVIITGAKFFDSQTYEFFLFAGLMFVDMILFS
WLAYRYKAIPLELLQDIDENKDEKKPALEFNNNTTEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g13637.t4 | PANTHER | PTHR11654 | OLIGOPEPTIDE TRANSPORTER-RELATED | 1 | 372 | 6.5E-101 |
| 4 | g13637.t4 | PANTHER | PTHR11654:SF465 | - | 1 | 372 | 6.5E-101 |
| 2 | g13637.t4 | Pfam | PF00854 | POT family | 1 | 90 | 7.2E-19 |
| 1 | g13637.t4 | Pfam | PF00854 | POT family | 267 | 332 | 2.1E-13 |
| 15 | g13637.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 19 | - |
| 18 | g13637.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 38 | - |
| 11 | g13637.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 39 | 49 | - |
| 21 | g13637.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 50 | 67 | - |
| 14 | g13637.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 68 | 276 | - |
| 20 | g13637.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 277 | 301 | - |
| 13 | g13637.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 302 | 312 | - |
| 19 | g13637.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 313 | 333 | - |
| 16 | g13637.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 334 | 344 | - |
| 17 | g13637.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 345 | 364 | - |
| 12 | g13637.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 365 | 397 | - |
| 10 | g13637.t4 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 270 | 373 | 5.75E-6 |
| 6 | g13637.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 42 | - |
| 9 | g13637.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 242 | 264 | - |
| 8 | g13637.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 279 | 301 | - |
| 5 | g13637.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 313 | 335 | - |
| 7 | g13637.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 345 | 364 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed