Gene loci information

Transcript annotation

  • This transcript has been annotated as Peptide transporter family 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13637 g13637.t7 TSS g13637.t7 31373914 31373914
chr_1 g13637 g13637.t7 isoform g13637.t7 31374474 31375241
chr_1 g13637 g13637.t7 exon g13637.t7.exon1 31374474 31374828
chr_1 g13637 g13637.t7 cds g13637.t7.CDS1 31374584 31374828
chr_1 g13637 g13637.t7 exon g13637.t7.exon2 31374891 31375241
chr_1 g13637 g13637.t7 cds g13637.t7.CDS2 31374891 31375239
chr_1 g13637 g13637.t7 TTS g13637.t7 NA NA

Sequences

>g13637.t7 Gene=g13637 Length=706
TTGAGGAGAAGCGAAAAGATGTTGAACAAAGTCAAGTCAAACTTAAATATCCTCGTGCAA
TTCCATTCATTATTAGCAATGAATTTTGCGAGCGTTTCAATTTCTATGGAATGAAAGCCA
TTTTGGTACTCTTTTTGACAAGAAAGTTGATGTATGATGATGACATTTCGACAATTATTT
ACCATACTTTCAATTGTCTCGTCTATTTCTTCTGCATCTTTGGAGCAATCATTGCTGATT
CATGGTGGGGTAAATTCAATACGATTCTCTATTTGTCGATTGTCTATGTTATCGGAAGTG
GTACTATGGCGTTAGCTGCGGTCGAGCCTTGGATTGCTATAGATCCCGGTGCAAGAGCTT
TAACAATTACTGGATTGTTTTTAATTGCATTGGGTAGTGGTGGAATTAAACCTTGTGTTG
CTGCATTTGGAGGAGAACAATTTAAAATGCCAGAGCAAGCTAAACAATTGGCAACCTTCT
TCTCGCTCTTTTATTTCTCTATAAATGCCGGATCTTTAATTTCAACATCTGTCACTCCAA
TTTTAAGAGAAGATATTCCATGTTTTGGTATGGATGATTGTTTCCCACTTGCTTTTGGTG
TACCTGCTATTTTGATGGTTGTTGCAATTTTATTCTTCTTATTCGGTAAATTTTTATACA
AAATTCTACCAAACCAGGGCAATATGTTAGTCAAAGTGTGCAAATG

>g13637.t7 Gene=g13637 Length=198
MKAILVLFLTRKLMYDDDISTIIYHTFNCLVYFFCIFGAIIADSWWGKFNTILYLSIVYV
IGSGTMALAAVEPWIAIDPGARALTITGLFLIALGSGGIKPCVAAFGGEQFKMPEQAKQL
ATFFSLFYFSINAGSLISTSVTPILREDIPCFGMDDCFPLAFGVPAILMVVAILFFLFGK
FLYKILPNQGNMLVKVCK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g13637.t7 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 1 198 5.7E-62
2 g13637.t7 PANTHER PTHR11654 OLIGOPEPTIDE TRANSPORTER-RELATED 1 198 1.8E-91
3 g13637.t7 PANTHER PTHR11654:SF465 - 1 198 1.8E-91
1 g13637.t7 Pfam PF00854 POT family 49 198 1.8E-44
15 g13637.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 20 -
23 g13637.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 21 46 -
18 g13637.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 47 51 -
22 g13637.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 52 71 -
14 g13637.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 72 82 -
19 g13637.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 83 106 -
17 g13637.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 107 125 -
21 g13637.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 126 145 -
13 g13637.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 146 156 -
20 g13637.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 157 178 -
16 g13637.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 179 198 -
10 g13637.t7 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 38 62 -
11 g13637.t7 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 124 136 -
9 g13637.t7 SUPERFAMILY SSF103473 MFS general substrate transporter 7 180 3.92E-12
5 g13637.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 42 -
4 g13637.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 49 71 -
8 g13637.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 86 108 -
7 g13637.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 120 142 -
6 g13637.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 157 179 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0006857 oligopeptide transport BP
GO:0022857 transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values