General information for g13663.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13663 is located on chr_1: 31464051..31465299 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13663 | g13663.t4 | TTS | g13663.t4 | 31463644 | 31463644 |
| chr_1 | g13663 | g13663.t4 | isoform | g13663.t4 | 31463799 | 31464499 |
| chr_1 | g13663 | g13663.t4 | exon | g13663.t4.exon1 | 31463799 | 31463959 |
| chr_1 | g13663 | g13663.t4 | cds | g13663.t4.CDS1 | 31463801 | 31463959 |
| chr_1 | g13663 | g13663.t4 | exon | g13663.t4.exon2 | 31464022 | 31464499 |
| chr_1 | g13663 | g13663.t4 | cds | g13663.t4.CDS2 | 31464022 | 31464354 |
| chr_1 | g13663 | g13663.t4 | TSS | g13663.t4 | 31465486 | 31465486 |
Sequences
>g13663.t4 Gene=g13663 Length=639
TTTGGATAAAAATGTTCTCCCTCCACATTGGGATCGTGAAGTTTTAATTGATTCGGCTAG
TTTAAGTGATCAAGAACTTTCTGATAGTTCCGATGATGAACCAAATGAAGTTAAAGATAG
ATTTTTTGCGCAATTACTTGAGTTTATGGAGAAACGAAACTCGCCTCTCAATAAAGGGCC
AAGTATTACAAATCGAGATGTGGACTTGTATCGACTTTACTACTCAGTAGAAAAATTAGG
TGGTTATGCTAATGTCACTAAAATTAGAAATTGGAAAGCAATTGCTAAACGTCTCGGATT
TACACCAACTGATGCAATCGTAAAATTGGTAAAGCATTCTTATAGAAAATTTCTATTAGC
ATTTGAAGAAGCAGTGTCAAAAGGAATCGAGGATTTACCTCCAAGAGCCAATCGAGATAA
AGCGAGAAGTAGTTCAACACGATCTGGCTCTGTGGCATCGCCAAAAGTAGTTGAAAGTGC
AAAGAAAAAAGTTGAAAAACCAACGACAAGTAGCGTAGCGGATGATTCAGAAAATACAAG
TGAATCTATTAAAGTTACAACTTCTCGAAAATTATCGACAGCAAGTACAAAATCGAAAGT
TGATAAAGTAGAGGAGAAAGCAAAATCTGAAAAATTGGA
>g13663.t4 Gene=g13663 Length=164
MEKRNSPLNKGPSITNRDVDLYRLYYSVEKLGGYANVTKIRNWKAIAKRLGFTPTDAIVK
LVKHSYRKFLLAFEEAVSKGIEDLPPRANRDKARSSSTRSGSVASPKVVESAKKKVEKPT
TSSVADDSENTSESIKVTTSRKLSTASTKSKVDKVEEKAKSEKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13663.t4 | CDD | cd16100 | ARID | 1 | 74 | 1.48545E-23 |
| 5 | g13663.t4 | Gene3D | G3DSA:1.10.150.60 | - | 1 | 92 | 1.3E-24 |
| 10 | g13663.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 164 | - |
| 11 | g13663.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 146 | - |
| 9 | g13663.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 164 | - |
| 2 | g13663.t4 | PANTHER | PTHR13964 | RBP-RELATED | 1 | 151 | 1.5E-28 |
| 3 | g13663.t4 | PANTHER | PTHR13964:SF27 | HAT-TRICK, ISOFORM D | 1 | 151 | 1.5E-28 |
| 1 | g13663.t4 | Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 1 | 74 | 3.6E-16 |
| 12 | g13663.t4 | ProSiteProfiles | PS51011 | ARID domain profile. | 1 | 78 | 24.277 |
| 7 | g13663.t4 | SMART | SM00501 | bright_3 | 1 | 79 | 1.2E-12 |
| 8 | g13663.t4 | SMART | SM01014 | ARID_2 | 1 | 74 | 5.5E-14 |
| 4 | g13663.t4 | SUPERFAMILY | SSF46774 | ARID-like | 1 | 88 | 1.57E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed