Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Homeotic protein ocelliless.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13703 g13703.t2 isoform g13703.t2 31851779 31861263
chr_1 g13703 g13703.t2 exon g13703.t2.exon1 31851779 31851947
chr_1 g13703 g13703.t2 cds g13703.t2.CDS1 31851779 31851947
chr_1 g13703 g13703.t2 exon g13703.t2.exon2 31861097 31861263
chr_1 g13703 g13703.t2 cds g13703.t2.CDS2 31861097 31861263
chr_1 g13703 g13703.t2 TSS g13703.t2 NA NA
chr_1 g13703 g13703.t2 TTS g13703.t2 NA NA

Sequences

>g13703.t2 Gene=g13703 Length=336
ATGGCGGGCTTTCTTAAAACAACTGATCTCGGTGCACATCCGCACAGCTATGGAGCGCCA
CATCATCCTCATCACAGCCACGGTCCACCATTGCCACCTGGAATGCCAATGACAATGACA
CCATTTGGATTACCACATGGTCTCGACGCTGTTGGCTTTCCACATCAAGGCGTAAATCCA
AGAAAGCAACGCAGAGAGCGAACAACATTTACAAGAGCACAATTAGATGTGCTTGAATCA
CTTTTTGGCAAAACTAGATATCCTGATATATTTATGCGCGAGGAAGTTGCACTTAAAATC
AATTTGCCAGAATCAAGAGTTCAGTATGTTCATTAA

>g13703.t2 Gene=g13703 Length=111
MAGFLKTTDLGAHPHSYGAPHHPHHSHGPPLPPGMPMTMTPFGLPHGLDAVGFPHQGVNP
RKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQYVH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g13703.t2 CDD cd00086 homeodomain 64 108 2.1076E-14
5 g13703.t2 Gene3D G3DSA:1.10.10.60 - 54 110 3.8E-18
8 g13703.t2 MobiDBLite mobidb-lite consensus disorder prediction 1 34 -
2 g13703.t2 PANTHER PTHR45793 HOMEOBOX PROTEIN 7 108 2.5E-42
3 g13703.t2 PANTHER PTHR45793:SF5 HOMEOTIC PROTEIN OCELLILESS 7 108 2.5E-42
1 g13703.t2 Pfam PF00046 Homeodomain 64 109 3.9E-13
9 g13703.t2 ProSiteProfiles PS50071 ‘Homeobox’ domain profile. 61 111 11.062
7 g13703.t2 SMART SM00389 HOX_1 63 111 2.8E-4
4 g13703.t2 SUPERFAMILY SSF46689 Homeodomain-like 41 109 3.25E-15

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003677 DNA binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed