General information for g13719.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13719 is located on chr_1: 32030356..32030580 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13719 | g13719.t4 | isoform | g13719.t4 | 32028126 | 32029277 |
| chr_1 | g13719 | g13719.t4 | exon | g13719.t4.exon1 | 32028126 | 32028220 |
| chr_1 | g13719 | g13719.t4 | TTS | g13719.t4 | 32028155 | 32028155 |
| chr_1 | g13719 | g13719.t4 | exon | g13719.t4.exon2 | 32028472 | 32029146 |
| chr_1 | g13719 | g13719.t4 | cds | g13719.t4.CDS1 | 32028476 | 32029027 |
| chr_1 | g13719 | g13719.t4 | exon | g13719.t4.exon3 | 32029210 | 32029277 |
| chr_1 | g13719 | g13719.t4 | TSS | g13719.t4 | NA | NA |
Sequences
>g13719.t4 Gene=g13719 Length=838
GCAGTGTCAGAGTGTATATATTCGATCACAAGTAAATGCACGCAATCAAATTTTTGTACC
GGAAAAAATTATCACACCGCCAAATCCAAATTGCTACGTTTGTGCCGCTAAACCTGAGCT
CATTTTGAAGGTCGATACAGATGTAATTACAGTTAGAGAATTTCGTGACGATATTTTGAT
TAAGGAAATGAATATGGTTAATCCGGATGTTATGATTGATGGCAAAGGAATCATTGTTAT
TTCATCTGAAGAGGGCGAGACTGAATGTAATGAAGAAAAGTTGCTTAAAGAAATGCAAAT
TGTCGATGGATGTATCTTAAAGGCCGAAGATTTCTTTCAAAATTATGAGCTCACAATTAC
AATCGTACATAAGAAAGCAGAACGTGAAGATGCAAAGTTTGAAATTATTGCCGATAAAAA
TATTTTAAAAACTGCTGAAAGTGTTGAAGAGTTAAAGAAACAAAAAACTGCCGAAGCTGC
TTCTCAATCTCAAGAACCTGGACCTTCTGGCTTAAATGGATCATCTTCAAATGGAGGTGA
AAGCAGCAAGAATGTTGCATATGAGAGCGATGAAGATGATTTAGTTCTTGTTGAAGAAAC
TCCAGCAAGTGCAGAGAAACGAAAGCACATTGATGAAGATGAATCACCATCATGCAAACG
AGTAAAAATTGATGAAAGTGAGAAACCAGCAACTCTAAATGATGAAGATGATGACTTGAT
TTGCATCGATGATGATTAATTTAGCAAAAACAGAAATACTGGATACTAAAAATAAAATAA
AATAATAAGTGGTGATTCCTTCTAAAAGTAAAATAAACAAAGTTTTATTTTTCAAATC
>g13719.t4 Gene=g13719 Length=183
MNMVNPDVMIDGKGIIVISSEEGETECNEEKLLKEMQIVDGCILKAEDFFQNYELTITIV
HKKAEREDAKFEIIADKNILKTAESVEELKKQKTAEAASQSQEPGPSGLNGSSSNGGESS
KNVAYESDEDDLVLVEETPASAEKRKHIDEDESPSCKRVKIDESEKPATLNDEDDDLICI
DDD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13719.t4 | Coils | Coil | Coil | 83 | 103 | - |
| 5 | g13719.t4 | Gene3D | G3DSA:3.10.290.20 | - | 1 | 103 | 4.0E-31 |
| 4 | g13719.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 183 | - |
| 3 | g13719.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 122 | - |
| 2 | g13719.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 173 | - |
| 1 | g13719.t4 | Pfam | PF14732 | Ubiquitin/SUMO-activating enzyme ubiquitin-like domain | 1 | 64 | 3.3E-14 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
