General information for g13722.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13722 is located on chr_1: 32064376..32065611 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13722 | g13722.t1 | TSS | g13722.t1 | 32064315 | 32064315 |
| chr_1 | g13722 | g13722.t1 | isoform | g13722.t1 | 32064376 | 32065611 |
| chr_1 | g13722 | g13722.t1 | exon | g13722.t1.exon1 | 32064376 | 32065410 |
| chr_1 | g13722 | g13722.t1 | cds | g13722.t1.CDS1 | 32064376 | 32065410 |
| chr_1 | g13722 | g13722.t1 | exon | g13722.t1.exon2 | 32065474 | 32065611 |
| chr_1 | g13722 | g13722.t1 | cds | g13722.t1.CDS2 | 32065474 | 32065611 |
| chr_1 | g13722 | g13722.t1 | TTS | g13722.t1 | 32065678 | 32065678 |
Sequences
>g13722.t1 Gene=g13722 Length=1173
ATGCTTTCTCTAGTAAATTATGGTTCAAGTGACGAAGAAGAAGATAATATTACAGATGAG
GAGGAAGTGAATGGAAACTCGAGTACACAAGAAAATAGATCAAAAAATGAAAATACAGAT
AAAGACTTTATTTTAACAAAATCAACAAAAATACAATTGCCACAACCAAAAGAAGTTCAA
ACAAATGTTATTGAAGAAGATGATGATGAATTTTTGCATAAAAAAGAGGTTTCTGAAGTT
CCTCTCCCTCCTCCAACAAAAGTCAAGCAAAAAGTAAAAATTATGATTCCAAAATTGTCA
GATTTTAAAGATAATGACGAAGATGATGATGATTTGAAACTTCCAGGACCAACTGCGCCT
AATAAAAAATCAGGTCTTTTAGGAATGTTACCAAAACCAGCGCATTCAATTATTCAACCA
ACAAAACCAACAGTAACTTCAAATTTACCACCACTATCGTCTTCCTCTACTCTAATACAA
AAACCAACTTCATCAGTCACATCTACTGCACATAATGCAACAGTGACTAATCAAGAAGTT
AAAAAGATTGGATTAATACCTTACACTCTTATGGAACACAAAAAGACTGCAGAAAATAAT
AAAAAGAAATCAGCAAAGAGAAAAGGAAAGGATAGTGAAGATGAGAGTGATGATGAAACT
TCCGAGCCATTCTTCACATTTAACTCAAATGAAGATCTACCACAAGTAAATGAAGATGAA
ATCAAAGCTATGGTTGAACGTGAGGCAAATAGAATCGAATTGAGGAAAATGCAAGCTGAA
AATAGGTATCAAATTGAAAATCAACAACAATCAGATTATGTTCAATATTATGAAGAGCAA
CAAACAAATGATGATTTAGATCAACAAGCAATGAAAGCATTAGTTGGAGGCACAAAAGCG
AAACGTTCGAAATTAGATGGCATTCAAATTGTCGATTTATCAGATAATGATGTATTGCCT
AATAAGGAAGAATGGTTGAGAAAAAGCTTGGCAGGAGAAACTAGTTTCTTGCCCACAGGG
AAAATTGATGAAAAGGGACCTGCACTGGCAAAAAGAAAACATCAAATTAGCTATTTGGCA
ATGCGTGCTGAAAAGAATATTGCAGAACTTGAAGCAATGTGGGCTGCAAATAGACAAAAT
AATCGAGAAGGAAAAAGCAAATATGGCTTTTAA
>g13722.t1 Gene=g13722 Length=390
MLSLVNYGSSDEEEDNITDEEEVNGNSSTQENRSKNENTDKDFILTKSTKIQLPQPKEVQ
TNVIEEDDDEFLHKKEVSEVPLPPPTKVKQKVKIMIPKLSDFKDNDEDDDDLKLPGPTAP
NKKSGLLGMLPKPAHSIIQPTKPTVTSNLPPLSSSSTLIQKPTSSVTSTAHNATVTNQEV
KKIGLIPYTLMEHKKTAENNKKKSAKRKGKDSEDESDDETSEPFFTFNSNEDLPQVNEDE
IKAMVEREANRIELRKMQAENRYQIENQQQSDYVQYYEEQQTNDDLDQQAMKALVGGTKA
KRSKLDGIQIVDLSDNDVLPNKEEWLRKSLAGETSFLPTGKIDEKGPALAKRKHQISYLA
MRAEKNIAELEAMWAANRQNNREGKSKYGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g13722.t1 | Coils | Coil | Coil | 242 | 269 | - |
| 3 | g13722.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - |
| 4 | g13722.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 59 | - |
| 6 | g13722.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 126 | - |
| 9 | g13722.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 116 | - |
| 7 | g13722.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 172 | - |
| 5 | g13722.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 214 | - |
| 8 | g13722.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 236 | - |
| 2 | g13722.t1 | PANTHER | PTHR13621 | PROLINE-RICH PROTEIN PRCC | 4 | 390 | 1.2E-29 |
| 1 | g13722.t1 | Pfam | PF10253 | Mitotic checkpoint regulator, MAD2B-interacting | 193 | 390 | 3.2E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K13105 (proline-rich protein PRCC)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
