Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative BTB and MATH domain-containing protein 43.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13825 g13825.t1 TSS g13825.t1 32616005 32616005
chr_1 g13825 g13825.t1 isoform g13825.t1 32616076 32617362
chr_1 g13825 g13825.t1 exon g13825.t1.exon1 32616076 32616236
chr_1 g13825 g13825.t1 cds g13825.t1.CDS1 32616076 32616236
chr_1 g13825 g13825.t1 exon g13825.t1.exon2 32616408 32617362
chr_1 g13825 g13825.t1 cds g13825.t1.CDS2 32616408 32617362
chr_1 g13825 g13825.t1 TTS g13825.t1 32617800 32617800

Sequences

>g13825.t1 Gene=g13825 Length=1116
ATGTCAAGCACGCCAAAATTAAAGTTTTTCGGATATTGTAATGTTAAAGTATCATGGAAG
CTCAAAAATTTCTCATCCGAATACTTTAATAATCCTAATTTTAGTTTATTTCAATCGCCT
GTCTTTCGTGTAACATTATCTAATTATAAAGTTGCAAAATTCAAGCTGGTAGCCGTTCGA
AATAGAAATACCATGAACATATTTCTGCGAAAAGATACCGAAGACAAATATTATGATGAA
TATTCAAATTTAATAATATATTATGAAATGAAACTTCGTGATTTTTTTATGAGTGAACTT
TTAAATCGTGCAGAAGGGAAAATCGAAAAGATGTTTTATGAACATAAGCTTGGAAAGTGT
CTTAGTTCAAAAGATTTGTCTCGACACATACCTCATGTTATAAAGGATAAAATGATAGAA
ATAGTTGTACTTCTTCGTTTTATTGAGAACAAGGAAGAGAGCACATATGTTAATACAATA
ATGTCAAATCAATATGAAAAAATGTTCAATAATCCAGATTACAGTGACTTCAAATTAATC
ACATCCGAAAATGAAGAGATTTTCGTTCATAAATTATTTCTCTCAGCGAGATCACCGGTT
TTTGATGCTATGATTAATACAAAGTTACTAGAAGGAACGGAAAAAAGGGCTAAAATCGAT
GATATTGATCCAAAATCACTTAAAGAACTTATTCGCTTTATCTATTCAGGAAGAGTTGAC
GAAATTGATCAAATCGCAAATGAACTTATATACGCTGCAGGAAAATATGAACTTGAAGAT
CTCAAACCACTCTGTGTTCGATCTCTTGGTATCAATATAAGTAATGATAATTGCTTAAAT
ACATTTGTTCTGGCCGATTTATTTATGGAAGAAGATTTAAAAAAGTATACAATGGCTTTC
ATCAAGTTTAATTACGACAAAATCAAAAACAGTGAACAGTGGAAAAATTTAACAAAAGAG
CAAGTTAAATTTTTATTGGATAAGCTGATGACTCCTGATCAAGATGGTTCAAATGTGAAT
TTAGTTACTACAATCACCATACAAAATTCACGTGCAATGCAGCCACAATTAGTGATCGTT
AATAATGATGTTACTGCTCCCGTTATTCCTCGTTAA

>g13825.t1 Gene=g13825 Length=371
MSSTPKLKFFGYCNVKVSWKLKNFSSEYFNNPNFSLFQSPVFRVTLSNYKVAKFKLVAVR
NRNTMNIFLRKDTEDKYYDEYSNLIIYYEMKLRDFFMSELLNRAEGKIEKMFYEHKLGKC
LSSKDLSRHIPHVIKDKMIEIVVLLRFIENKEESTYVNTIMSNQYEKMFNNPDYSDFKLI
TSENEEIFVHKLFLSARSPVFDAMINTKLLEGTEKRAKIDDIDPKSLKELIRFIYSGRVD
EIDQIANELIYAAGKYELEDLKPLCVRSLGINISNDNCLNTFVLADLFMEEDLKKYTMAF
IKFNYDKIKNSEQWKNLTKEQVKFLLDKLMTPDQDGSNVNLVTTITIQNSRAMQPQLVIV
NNDVTAPVIPR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13825.t1 CDD cd14733 BACK 274 327 0.00000
8 g13825.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 154 267 0.00000
7 g13825.t1 Gene3D G3DSA:1.25.40.420 - 272 334 0.00000
3 g13825.t1 PANTHER PTHR24413:SF213 FI01029P-RELATED 70 323 0.00000
4 g13825.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 70 323 0.00000
2 g13825.t1 Pfam PF00651 BTB/POZ domain 166 269 0.00000
1 g13825.t1 Pfam PF07707 BTB And C-terminal Kelch 278 327 0.00027
9 g13825.t1 ProSiteProfiles PS50097 BTB domain profile. 175 243 17.19000
6 g13825.t1 SMART SM00225 BTB_4 175 273 0.00000
5 g13825.t1 SUPERFAMILY SSF54695 POZ domain 158 269 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values