General information for g13831.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein aubergine.
Parent gene
- The parent gene g13831 is located on chr_1: 32624624..32627395 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13831 | g13831.t1 | isoform | g13831.t1 | 32624624 | 32627395 |
| chr_1 | g13831 | g13831.t1 | exon | g13831.t1.exon1 | 32624624 | 32624729 |
| chr_1 | g13831 | g13831.t1 | cds | g13831.t1.CDS1 | 32624624 | 32624729 |
| chr_1 | g13831 | g13831.t1 | exon | g13831.t1.exon2 | 32624790 | 32624948 |
| chr_1 | g13831 | g13831.t1 | cds | g13831.t1.CDS2 | 32624790 | 32624948 |
| chr_1 | g13831 | g13831.t1 | exon | g13831.t1.exon3 | 32625003 | 32626246 |
| chr_1 | g13831 | g13831.t1 | cds | g13831.t1.CDS3 | 32625003 | 32626246 |
| chr_1 | g13831 | g13831.t1 | exon | g13831.t1.exon4 | 32626313 | 32626693 |
| chr_1 | g13831 | g13831.t1 | cds | g13831.t1.CDS4 | 32626313 | 32626693 |
| chr_1 | g13831 | g13831.t1 | exon | g13831.t1.exon5 | 32626755 | 32626996 |
| chr_1 | g13831 | g13831.t1 | cds | g13831.t1.CDS5 | 32626755 | 32626996 |
| chr_1 | g13831 | g13831.t1 | exon | g13831.t1.exon6 | 32627059 | 32627395 |
| chr_1 | g13831 | g13831.t1 | cds | g13831.t1.CDS6 | 32627059 | 32627395 |
| chr_1 | g13831 | g13831.t1 | TSS | g13831.t1 | 32627621 | 32627621 |
| chr_1 | g13831 | g13831.t1 | TTS | g13831.t1 | NA | NA |
Sequences
>g13831.t1 Gene=g13831 Length=2469
ATGTCTTCGAGTTCATCTTTTGATTCTCTCGATGTACAAGTAAAGAAAACTTTTGGTCGA
GGAAGAGGAAGGGATGAACTTAGCAATACTCCTTCACAGCAATCAATTTCATCATCAGAA
TTTTCTGATTATGGATATGTCACAAGACCTGCTGGAATTGATCAATCATCAAAAAGTGGT
AGTATTGGAGTCGTAATTCCATTATGCACTAACTATTTCAGACTCTCAAAGCTTCCTGAT
TTTGATTTTCTTCATTACCATGTATCTTTTGATCCGCCAAATGATTCTCAAAAACTTTTG
AGCAGTCTTGTAGCACAACATCGTGAAGTTTTTGGTGGTTATATTTTTGATAATGGCAGT
GCATTATATTTGACAAAAGCACTTCCTGAAGAAACAATGTTATTTGATTGCAAATCACGT
GAGGGAATTGATTACAAAATGACTGTCAAAAAAACAAAGAATGTGATTGAAATGAGTAGT
TCATTAGGATTTAACTTACTCAATTTGATTTTAAGACGTGCTATGAAAGGACTGAATTTG
CAATTAGTGCGCCGTAATCTCTATGATCCACAAAATAAGATAAATATCAACGATTATAAG
CTTACATTATGGCCAGGATATGTTACCTCAATTCGCCAGCATGAGGAAGAAATTTTACTT
TGCTGTGAAATTTCACATAAAGTTCTGCGTCAAGAAACAATTTATGATATTTTACGTAAT
CATTTGCAAGAAAACAGATCTAATTACAAAGATAGCTTCAAAAAGGATGTTGTTGGCTCG
ATTGTTTTAACTGGATACAATAACAGAACATATCGTGTTGATGATGTTGATTTTAACAAG
ACTCCAATGACTACTTTCCCTTACAATGATCGTCAAATTTCATTTATTGATTATTACCGT
GAAAAATACAACATCACAATAAAAGATGCTCAACAACCGCTTCTTATTACAAATCCAACG
CCAAAAGAAATTCGCGCTGGTCGCAAGGAATCTTCATGCTTGATTCCTGAATTATGCTCT
GCTACTGGATTAACTGATAGAATGCGCACAAATTTTCAATTAATGAGGGCGCTAGCTGAG
TATACTCGAATGGACCCTAAAAGACGAATTCAAAGGTTAAAGGACTTCAGTAATCGCTTG
AATACAACTGAAGAAAGTAAGAAGCAGTTCAAAACTTTTGGTACAGAGTTAAAACCCGAG
CTTGTAAAACTTTATGGTCGAGAATTACCACAAGAAATGATTATTTTTGGAAATGGTAAA
ACTGCACAAAATGATGAACGTGTTGATTGGACAAATCCAATGAAAGTCAATCAAATGTTT
CAAAATGAACCATTAGTTCGTTGGGGAATAATTTATCCTAAACGTTGTGAAAGTGAAACT
AGACAATTTTTAAAATTATTAGTCGAAGTTGCACGTGGAATGCAATATGAAATGAAAGAA
CCGAAATTGATTGAATTGAATGACGATCGAATTGGCACTTATAGTTTACAATTGGAACAG
TTTATTCAAAAGGATCCTAAATTTGTTTTGATAGTTTTGCCGAATAATGGAGCGGATCGT
TATTCTGCTGTCAAGAAAATTTCATGTGTCGATAATGCAGTACCAATACAAGTTGTTGTA
TCGAAAACTATGCAACCAAAAAAGGGAAATATTGGAAGTGTCAAATCTATTGCTACTAAG
GTTTTGATTCAAATGAATTGCAAACTTGGAGGAGCGGCTTGGTCTATCAAATATCCATTA
AATGGAATTATGACTATTGGCTTTGATGTTGGTCGCGATACTGTTACTAAAAAAGCATAC
GGTGCTTTTGTTGCCACAATGGATATAAAGAAGAAAATTCAATTCTATAGTTCAGTTGCT
CCTCATTCTGGTGGTCAAGAATGTTCAGCACAAATTGATGTTCATATGAGGAAGGCGCTC
AAAACTTATTACAATATCAATGGTTGTCTTCCTGAAAGAATTTTAATGTACCGTGATGGT
GTTGGTGATGGAGAAATTCATTACGTTCATAGCACTGAAGTTAAAATCTTGGAAAATACA
CTCAATGAAATTTATCAAAAGAGTTCTCCTGGAATTCTTCCTCGATTCTGCTTTATCATC
GTTTCAAAGCGCATCAATACTCGATTCTTTAGTGATCGTGGTGCTGGTTTTGATAATCCG
GTTTCTGGAGTTGTTGTTGATAATACTGTGACATTGCCTGAAAGATACGATTTTTATTTA
ATCAGTCAATCAGTACGACAAGGCACAGTTTCACCTACTAGCTATAACATTATTCATGAT
ACATTCGGACTTACAGCAGATCGACTTCAAATTCTTACATACAAAATGTGTCATCTTTAC
TATAATTGGAGTGGAACTACAAGGGTTCCTTGCGTTTTGCAATATGCTCAAAAACTCGCT
GTATTGGTTGGACAATATTTGCATACTGTTCCAAATAGTCTAATGGAAAATCAGCTTTAC
TACTTGTAA
>g13831.t1 Gene=g13831 Length=822
MSSSSSFDSLDVQVKKTFGRGRGRDELSNTPSQQSISSSEFSDYGYVTRPAGIDQSSKSG
SIGVVIPLCTNYFRLSKLPDFDFLHYHVSFDPPNDSQKLLSSLVAQHREVFGGYIFDNGS
ALYLTKALPEETMLFDCKSREGIDYKMTVKKTKNVIEMSSSLGFNLLNLILRRAMKGLNL
QLVRRNLYDPQNKININDYKLTLWPGYVTSIRQHEEEILLCCEISHKVLRQETIYDILRN
HLQENRSNYKDSFKKDVVGSIVLTGYNNRTYRVDDVDFNKTPMTTFPYNDRQISFIDYYR
EKYNITIKDAQQPLLITNPTPKEIRAGRKESSCLIPELCSATGLTDRMRTNFQLMRALAE
YTRMDPKRRIQRLKDFSNRLNTTEESKKQFKTFGTELKPELVKLYGRELPQEMIIFGNGK
TAQNDERVDWTNPMKVNQMFQNEPLVRWGIIYPKRCESETRQFLKLLVEVARGMQYEMKE
PKLIELNDDRIGTYSLQLEQFIQKDPKFVLIVLPNNGADRYSAVKKISCVDNAVPIQVVV
SKTMQPKKGNIGSVKSIATKVLIQMNCKLGGAAWSIKYPLNGIMTIGFDVGRDTVTKKAY
GAFVATMDIKKKIQFYSSVAPHSGGQECSAQIDVHMRKALKTYYNINGCLPERILMYRDG
VGDGEIHYVHSTEVKILENTLNEIYQKSSPGILPRFCFIIVSKRINTRFFSDRGAGFDNP
VSGVVVDNTVTLPERYDFYLISQSVRQGTVSPTSYNIIHDTFGLTADRLQILTYKMCHLY
YNWSGTTRVPCVLQYAQKLAVLVGQYLHTVPNSLMENQLYYL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g13831.t1 | CDD | cd02845 | PAZ_piwi_like | 224 | 345 | 1.44542E-45 |
| 12 | g13831.t1 | CDD | cd04658 | Piwi_piwi-like_Euk | 353 | 805 | 1.65618E-170 |
| 8 | g13831.t1 | Gene3D | G3DSA:2.170.260.10 | paz domain | 231 | 351 | 1.3E-38 |
| 10 | g13831.t1 | Gene3D | G3DSA:3.40.50.2300 | - | 436 | 568 | 4.9E-31 |
| 9 | g13831.t1 | Gene3D | G3DSA:3.30.420.10 | - | 579 | 820 | 1.5E-62 |
| 15 | g13831.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 39 | - |
| 4 | g13831.t1 | PANTHER | PTHR22891 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 51 | 822 | 2.6E-231 |
| 5 | g13831.t1 | PANTHER | PTHR22891:SF164 | PIWI-LIKE PROTEIN 1 | 51 | 822 | 2.6E-231 |
| 3 | g13831.t1 | Pfam | PF16486 | N-terminal domain of argonaute | 66 | 160 | 6.9E-8 |
| 2 | g13831.t1 | Pfam | PF02170 | PAZ domain | 240 | 364 | 2.1E-32 |
| 1 | g13831.t1 | Pfam | PF02171 | Piwi domain | 508 | 807 | 1.9E-81 |
| 17 | g13831.t1 | ProSiteProfiles | PS50821 | PAZ domain profile. | 226 | 343 | 26.779 |
| 16 | g13831.t1 | ProSiteProfiles | PS50822 | Piwi domain profile. | 508 | 808 | 47.219 |
| 13 | g13831.t1 | SMART | SM00949 | PAZ_2_a_3 | 232 | 367 | 5.5E-58 |
| 14 | g13831.t1 | SMART | SM00950 | Piwi_a_2 | 508 | 808 | 5.2E-100 |
| 7 | g13831.t1 | SUPERFAMILY | SSF101690 | PAZ domain | 67 | 389 | 2.98E-74 |
| 6 | g13831.t1 | SUPERFAMILY | SSF53098 | Ribonuclease H-like | 361 | 822 | 1.54E-108 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0003676 | nucleic acid binding | MF |
KEGG
Orthology
- This transcript has been annotated with K02156 (aubergine)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
