General information for g1385.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Adenylate kinase isoenzyme 6-like protein.
Parent gene
- The parent gene g1385 is located on chr_3: 10436930..10437572 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1385 | g1385.t1 | TSS | g1385.t1 | 10436828 | 10436828 |
| chr_3 | g1385 | g1385.t1 | isoform | g1385.t1 | 10436930 | 10437572 |
| chr_3 | g1385 | g1385.t1 | exon | g1385.t1.exon1 | 10436930 | 10436966 |
| chr_3 | g1385 | g1385.t1 | cds | g1385.t1.CDS1 | 10436930 | 10436966 |
| chr_3 | g1385 | g1385.t1 | exon | g1385.t1.exon2 | 10437032 | 10437174 |
| chr_3 | g1385 | g1385.t1 | cds | g1385.t1.CDS2 | 10437032 | 10437174 |
| chr_3 | g1385 | g1385.t1 | exon | g1385.t1.exon3 | 10437246 | 10437572 |
| chr_3 | g1385 | g1385.t1 | cds | g1385.t1.CDS3 | 10437246 | 10437572 |
| chr_3 | g1385 | g1385.t1 | TTS | g1385.t1 | 10437590 | 10437590 |
Sequences
>g1385.t1 Gene=g1385 Length=507
ATGGCAAAACCTAATATACTTGTTACGGGGACTCCAGGTGCAGGCAAGTCTCATTTTGCA
AAACAAATTGCCGAAGAAAATGGAATGAGATTTCTTGAAATAAGCAAAATTGTACAGGAC
AATGGCTTTACAGACGGTTTCGATGAAACACTCAATTGTCCAATATTGGATGAAGATAAG
TTGCTTGACTATCTTGAACCACTTATGAACGAGGGAAATAATGTAGCAGAATATCATTCC
TCTGAGTTCTTTCCTGAACGTTGGTTTCAAGCTGTTTATGTGGTGAGATGCAATACTGAT
GTTTTATTCAAGAGACTCGAAGAGAGAGGATACAATGCAAAAAAGATTCAGAACAATGTT
GAATATGAAATATTTCAAATGGCACTGGATGAAGCAAAGAGCAGCTATAAGCCGGAAATA
GTATTTGAAGTACGTGGTGAAAATGAAAAAGACCTCGAAGATAATTTAAAGAAGGTTGGT
GAATTTATAAACAATTATGAAGAATGA
>g1385.t1 Gene=g1385 Length=168
MAKPNILVTGTPGAGKSHFAKQIAEENGMRFLEISKIVQDNGFTDGFDETLNCPILDEDK
LLDYLEPLMNEGNNVAEYHSSEFFPERWFQAVYVVRCNTDVLFKRLEERGYNAKKIQNNV
EYEIFQMALDEAKSSYKPEIVFEVRGENEKDLEDNLKKVGEFINNYEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g1385.t1 | Coils | Coil | Coil | 149 | 168 | - |
| 6 | g1385.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 168 | 1.4E-50 |
| 4 | g1385.t1 | Hamap | MF_00039 | Putative adenylate kinase. | 4 | 168 | 23.973988 |
| 2 | g1385.t1 | PANTHER | PTHR12595:SF0 | ADENYLATE KINASE ISOENZYME 6 | 2 | 167 | 2.9E-59 |
| 3 | g1385.t1 | PANTHER | PTHR12595 | POS9-ACTIVATING FACTOR FAP7-RELATED | 2 | 167 | 2.9E-59 |
| 1 | g1385.t1 | Pfam | PF13238 | AAA domain | 6 | 125 | 3.4E-23 |
| 5 | g1385.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 159 | 3.15E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004017 | adenylate kinase activity | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K18532 (adenylate kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
