General information for g13870.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein bric-a-brac 2.
Parent gene
- The parent gene g13870 is located on chr_1: 33019276..33042878 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13870 | g13870.t1 | TSS | g13870.t1 | 33019259 | 33019259 |
| chr_1 | g13870 | g13870.t1 | isoform | g13870.t1 | 33019276 | 33042878 |
| chr_1 | g13870 | g13870.t1 | exon | g13870.t1.exon1 | 33019276 | 33019416 |
| chr_1 | g13870 | g13870.t1 | cds | g13870.t1.CDS1 | 33019276 | 33019416 |
| chr_1 | g13870 | g13870.t1 | exon | g13870.t1.exon2 | 33035317 | 33035508 |
| chr_1 | g13870 | g13870.t1 | cds | g13870.t1.CDS2 | 33035317 | 33035508 |
| chr_1 | g13870 | g13870.t1 | exon | g13870.t1.exon3 | 33035565 | 33036006 |
| chr_1 | g13870 | g13870.t1 | cds | g13870.t1.CDS3 | 33035565 | 33036006 |
| chr_1 | g13870 | g13870.t1 | exon | g13870.t1.exon4 | 33036072 | 33036289 |
| chr_1 | g13870 | g13870.t1 | cds | g13870.t1.CDS4 | 33036072 | 33036289 |
| chr_1 | g13870 | g13870.t1 | exon | g13870.t1.exon5 | 33036454 | 33036537 |
| chr_1 | g13870 | g13870.t1 | cds | g13870.t1.CDS5 | 33036454 | 33036537 |
| chr_1 | g13870 | g13870.t1 | exon | g13870.t1.exon6 | 33041860 | 33042442 |
| chr_1 | g13870 | g13870.t1 | cds | g13870.t1.CDS6 | 33041860 | 33042442 |
| chr_1 | g13870 | g13870.t1 | exon | g13870.t1.exon7 | 33042730 | 33042878 |
| chr_1 | g13870 | g13870.t1 | cds | g13870.t1.CDS7 | 33042730 | 33042878 |
| chr_1 | g13870 | g13870.t1 | TTS | g13870.t1 | 33043067 | 33043067 |
Sequences
>g13870.t1 Gene=g13870 Length=1809
ATGGGCAGTGAGCAATACTGCTTAAGGTGGAATAATCATCAATCCAACCTGTTAGGGGTT
TTTAGTCAACTACTGCAGGACGAGAGCTTGGTGGACGTTACATTAGCTTGCTCAGAGGGC
ACTTCCATCCGAGCCCATAAGGTTGTTCTTTCAGCCTGTTCATCATACTTTCAAAGTCTT
TTTCTGGATCACCCCGCCAGACATCCTATTGTTATTCTTAAAGACGTTCGATTCAGTGAA
TTGCGAACATTAATTGAATTCATGTATAAAGGTGAAGTGAACGTAGAATATTGTCAATTA
TCAGCGCTACTGAAAACGGCTGAATCATTAAAAGTTAAAGGATTAGCAGAAATGACCAAT
CAAAATGCAGTATCAAAAGAACCAGAGCGTGATTCAGATCGTCTTCGATTGCACACACCA
ACGACACCATCAGCAGCACCCTCGTCCTCGGTAAAGAACGAGATGCTAGAAATGAGTCGA
GAAAAACAGCGACATGATAATGAGATCTGCACACCATCACCGCCATCGCGCGTGCCATCA
TCACCAGGCTCATCACTGTCAATGTATCAGAAAAAGCTGCATACTACGAGTGCATCAGCT
TCAGCCACGACGACCTCGATCACGGGCAGTGGCTCGCATCACATAGATTCAATTATTAAA
GAGGAGCCAACATTCAATGATCATCGTACACATCATCAACATCGGAATGATGAATCAATG
GAAGATGATGATGATGACGATGACGATGAAAATCTTCATATGAAGAATGAAGTTGGTCTC
AATATGACTCTCAATTCAACACTTTTGCAAAATTCAATATCATCATCAGTCAATTCGACT
ACATCATTAGCCGACATGCAATCATCTCGATATTCAAGTAATTTACTAGGAAACTCATCG
AGCAGTGGAACACGACAAAGTCCACTAAATAGTGACTTGCCAGGACCATCAGGAATAATG
GGATCAGCTGGACCTATGCAGCATGCGCCATTGTCTCTTAAGAAAGAATCGGACTGGGAT
CGCTCGGATGATAAGGAGAGCACATCGTCTGACTACAGACATTCTCATGGTGATATGGAA
TCGTCGACGGACTTGTTGCATGGTGAAAGATCAAGTAGTGTCGTTGGTTTACCAATCTCG
TCTTCGTCGTCTAGTGAACAAAATAGCAGTGTTAATAGTAATAATAGTGGTCCAATATAT
CCATGTATGTACTGTGGTCAGACTTTTCCGCATCAGAGCAAATTGACGAGGCATATTCTC
TCACACTCACTGGAAACACTCAAATATCGTGAAGTGTCGCATCTGCTAGGACACACGCAG
TTTGGACTCTTGTCGCCACATGACCTACCTCCGCCATCTCACTTTGCCAGTCGACAAGTG
TCAATGGATTCACTGGAGCCTTCTGGAGACAATTCGCCTATGGATATGGAAAGTAACAAT
CCTTTTGCTAATAATCCAGGCACGAGTAATTCAAATAATGATGCGGCTGGCAGTGGCGGT
GTGGTGCTGTGCAAATTCTGTGGTAAAAGTTTTCCTGATGTGTCATCACTTATTACGCAT
CTTCCTGTACATACGGGCGATCGACCATTTAAATGTGAATTTTGTGGAAAAGCCTTTAAA
CTACGGCATCATATGAAAGATCACTGTCGTGTGCATACTGGCGAGCGACCTTTTCGATGT
CAAATGTGTGGTAAAACTTTCTCTCGATCGACCATTTTAAAAGCGCATGAAAAAACGCAT
TATCCAAAATATGTGAGAAAGTTTCTTTCGCCAAGTCCGGTGGATAGTAAAGACGATGCA
CAACAATAG
>g13870.t1 Gene=g13870 Length=602
MGSEQYCLRWNNHQSNLLGVFSQLLQDESLVDVTLACSEGTSIRAHKVVLSACSSYFQSL
FLDHPARHPIVILKDVRFSELRTLIEFMYKGEVNVEYCQLSALLKTAESLKVKGLAEMTN
QNAVSKEPERDSDRLRLHTPTTPSAAPSSSVKNEMLEMSREKQRHDNEICTPSPPSRVPS
SPGSSLSMYQKKLHTTSASASATTTSITGSGSHHIDSIIKEEPTFNDHRTHHQHRNDESM
EDDDDDDDDENLHMKNEVGLNMTLNSTLLQNSISSSVNSTTSLADMQSSRYSSNLLGNSS
SSGTRQSPLNSDLPGPSGIMGSAGPMQHAPLSLKKESDWDRSDDKESTSSDYRHSHGDME
SSTDLLHGERSSSVVGLPISSSSSSEQNSSVNSNNSGPIYPCMYCGQTFPHQSKLTRHIL
SHSLETLKYREVSHLLGHTQFGLLSPHDLPPPSHFASRQVSMDSLEPSGDNSPMDMESNN
PFANNPGTSNSNNDAAGSGGVVLCKFCGKSFPDVSSLITHLPVHTGDRPFKCEFCGKAFK
LRHHMKDHCRVHTGERPFRCQMCGKTFSRSTILKAHEKTHYPKYVRKFLSPSPVDSKDDA
QQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 18 | g13870.t1 | CDD | cd18315 | BTB_POZ_BAB-like | 30 | 114 | 2.94199E-35 |
| 17 | g13870.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 7 | 165 | 3.5E-31 |
| 16 | g13870.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 379 | 434 | 5.0E-5 |
| 15 | g13870.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 503 | 525 | 1.8E-7 |
| 14 | g13870.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 526 | 554 | 1.0E-12 |
| 13 | g13870.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 555 | 583 | 3.8E-11 |
| 32 | g13870.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 248 | - |
| 28 | g13870.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 154 | - |
| 31 | g13870.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 213 | - |
| 30 | g13870.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 239 | - |
| 33 | g13870.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 393 | - |
| 34 | g13870.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 365 | - |
| 29 | g13870.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 393 | - |
| 4 | g13870.t1 | PANTHER | PTHR23110:SF100 | MATERNAL GENE REQUIRED FOR MEIOSIS, ISOFORM H-RELATED | 1 | 145 | 1.4E-147 |
| 7 | g13870.t1 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 1 | 145 | 1.4E-147 |
| 5 | g13870.t1 | PANTHER | PTHR23110:SF100 | MATERNAL GENE REQUIRED FOR MEIOSIS, ISOFORM H-RELATED | 392 | 447 | 1.4E-147 |
| 8 | g13870.t1 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 392 | 447 | 1.4E-147 |
| 6 | g13870.t1 | PANTHER | PTHR23110:SF100 | MATERNAL GENE REQUIRED FOR MEIOSIS, ISOFORM H-RELATED | 534 | 602 | 1.4E-147 |
| 9 | g13870.t1 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 534 | 602 | 1.4E-147 |
| 1 | g13870.t1 | Pfam | PF00651 | BTB/POZ domain | 21 | 122 | 2.6E-23 |
| 3 | g13870.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 400 | 422 | 1.9E-5 |
| 2 | g13870.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 558 | 580 | 0.0021 |
| 21 | g13870.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 402 | 422 | - |
| 22 | g13870.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 504 | 524 | - |
| 19 | g13870.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 532 | 552 | - |
| 20 | g13870.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 560 | 580 | - |
| 39 | g13870.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 31 | 97 | 21.43 |
| 38 | g13870.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 400 | 427 | 11.697 |
| 37 | g13870.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 502 | 529 | 14.108 |
| 35 | g13870.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 530 | 557 | 16.29 |
| 36 | g13870.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 558 | 580 | 12.653 |
| 23 | g13870.t1 | SMART | SM00225 | BTB_4 | 31 | 127 | 3.4E-21 |
| 27 | g13870.t1 | SMART | SM00355 | c2h2final6 | 400 | 422 | 6.8E-4 |
| 24 | g13870.t1 | SMART | SM00355 | c2h2final6 | 502 | 524 | 0.14 |
| 25 | g13870.t1 | SMART | SM00355 | c2h2final6 | 530 | 552 | 0.049 |
| 26 | g13870.t1 | SMART | SM00355 | c2h2final6 | 558 | 580 | 0.0041 |
| 12 | g13870.t1 | SUPERFAMILY | SSF54695 | POZ domain | 4 | 118 | 2.12E-27 |
| 11 | g13870.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 503 | 539 | 2.19E-11 |
| 10 | g13870.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 528 | 580 | 3.96E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
