General information for g13887.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase T1.
Parent gene
- The parent gene g13887 is located on chr_1: 33102279..33103129 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13887 | g13887.t2 | isoform | g13887.t2 | 33102176 | 33103129 |
| chr_1 | g13887 | g13887.t2 | exon | g13887.t2.exon1 | 33102176 | 33103129 |
| chr_1 | g13887 | g13887.t2 | TTS | g13887.t2 | 33102224 | 33102224 |
| chr_1 | g13887 | g13887.t2 | cds | g13887.t2.CDS1 | 33102279 | 33102905 |
| chr_1 | g13887 | g13887.t2 | TSS | g13887.t2 | 33103158 | 33103158 |
Sequences
>g13887.t2 Gene=g13887 Length=954
ATGGCAAAATCATTTAAAATTTTTTACGACCATTTCTCACCACTTTCTAGAAGTCTATTA
ATCTTGTTTGAAAGGAATAATGTAGAATGTGAAAAAATATCTGTGGCATTAAGAAAGGGT
AAGCGTAAATTTAATTTAAATTCAAATTTTTTCTTTCTTATCCATTGTTGTGGGACAAAG
TTCATTTTTTGCCCCTAAACTTTTTCTTCGATCAAACTTATTTTATGTATTCACAAAAAT
TTAAAGGTGAGCATCTTAGTGAAGAGTTTGGGGATAAAATAAATCGCTTTCATAAGGTAC
CTGTGATTCATGATAGTGATGGATTTCGTTTAGCTGAATCAATAGCAATTTTTCATTATT
TGGGTCGCAGAGGGATTTTTGAGGAACGATGGTATCCGAAGAATGATATAAAAAAGCTTT
CACAAATTGATGAATTTATGCAATGGCATCACAATTCTTTGGCATTTAGTGCAGCATCGA
TTTTTTATAATGCATGGATAAAGCCTATTCGTGAAATTAATATGCTGGAACATGGAATGA
TGAGAAATGTTCGTGATCCTTTAAATTATGTTGACATTGATAATTCATTAGATTTGCTTG
AAAATACATGGTTAAAAGAAAACAAGTTTATTGTGGGTGAGGAACCAACTTTTGCTGAAA
TTCTTGCCTCATGCACTCTAATGCAAGTCATCGGTCTGCGACTTTTCAGACTTGACGAGC
AGAAATATCAAAAAGTAACAAAATGGCTGAATGCAACGAAATCTTATTTTAATCCAGAAT
TCGATGAATTGCACAAATACATATATAAATATGGAGAGAAATTTAATGGAAAAAGTCCTT
TTGAAAATTAAATTTTTCTGGATCAAGTTTGTCAGTTAAAATAAAATTTTCAAATAAAAG
CGCTTTTAAATTTATCAACTTGTTTTTGTTTTTCGCGCTCAAAATTTATTTCTG
>g13887.t2 Gene=g13887 Length=208
MYSQKFKGEHLSEEFGDKINRFHKVPVIHDSDGFRLAESIAIFHYLGRRGIFEERWYPKN
DIKKLSQIDEFMQWHHNSLAFSAASIFYNAWIKPIREINMLEHGMMRNVRDPLNYVDIDN
SLDLLENTWLKENKFIVGEEPTFAEILASCTLMQVIGLRLFRLDEQKYQKVTKWLNATKS
YFNPEFDELHKYIYKYGEKFNGKSPFEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g13887.t2 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 2 | 49 | 0.0000000 |
| 6 | g13887.t2 | Gene3D | G3DSA:1.20.1050.10 | - | 55 | 206 | 0.0000000 |
| 3 | g13887.t2 | PANTHER | PTHR43917 | - | 6 | 203 | 0.0000000 |
| 2 | g13887.t2 | Pfam | PF02798 | Glutathione S-transferase, N-terminal domain | 7 | 48 | 0.0002500 |
| 1 | g13887.t2 | Pfam | PF00043 | Glutathione S-transferase, C-terminal domain | 120 | 176 | 0.0000035 |
| 9 | g13887.t2 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 54 | 11.1580000 |
| 8 | g13887.t2 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 61 | 206 | 10.9160000 |
| 4 | g13887.t2 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 6 | 60 | 0.0000000 |
| 5 | g13887.t2 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 54 | 190 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed