General information for g13889.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Chromodomain-helicase-DNA-binding protein Mi-2-like protein.
Parent gene
- The parent gene g13889 is located on chr_1: 33135396..33135768 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13889 | g13889.t1 | TTS | g13889.t1 | 33128800 | 33128800 |
| chr_1 | g13889 | g13889.t1 | isoform | g13889.t1 | 33128973 | 33135768 |
| chr_1 | g13889 | g13889.t1 | exon | g13889.t1.exon1 | 33128973 | 33129109 |
| chr_1 | g13889 | g13889.t1 | cds | g13889.t1.CDS1 | 33128973 | 33129109 |
| chr_1 | g13889 | g13889.t1 | exon | g13889.t1.exon2 | 33129180 | 33131132 |
| chr_1 | g13889 | g13889.t1 | cds | g13889.t1.CDS2 | 33129180 | 33131132 |
| chr_1 | g13889 | g13889.t1 | exon | g13889.t1.exon3 | 33131256 | 33131342 |
| chr_1 | g13889 | g13889.t1 | cds | g13889.t1.CDS3 | 33131256 | 33131342 |
| chr_1 | g13889 | g13889.t1 | exon | g13889.t1.exon4 | 33131429 | 33131489 |
| chr_1 | g13889 | g13889.t1 | cds | g13889.t1.CDS4 | 33131429 | 33131489 |
| chr_1 | g13889 | g13889.t1 | exon | g13889.t1.exon5 | 33131562 | 33132292 |
| chr_1 | g13889 | g13889.t1 | cds | g13889.t1.CDS5 | 33131562 | 33132292 |
| chr_1 | g13889 | g13889.t1 | exon | g13889.t1.exon6 | 33132364 | 33132376 |
| chr_1 | g13889 | g13889.t1 | cds | g13889.t1.CDS6 | 33132364 | 33132376 |
| chr_1 | g13889 | g13889.t1 | exon | g13889.t1.exon7 | 33132666 | 33134456 |
| chr_1 | g13889 | g13889.t1 | cds | g13889.t1.CDS7 | 33132666 | 33134456 |
| chr_1 | g13889 | g13889.t1 | exon | g13889.t1.exon8 | 33134558 | 33135334 |
| chr_1 | g13889 | g13889.t1 | cds | g13889.t1.CDS8 | 33134558 | 33135334 |
| chr_1 | g13889 | g13889.t1 | exon | g13889.t1.exon9 | 33135395 | 33135441 |
| chr_1 | g13889 | g13889.t1 | cds | g13889.t1.CDS9 | 33135395 | 33135441 |
| chr_1 | g13889 | g13889.t1 | exon | g13889.t1.exon10 | 33135735 | 33135768 |
| chr_1 | g13889 | g13889.t1 | cds | g13889.t1.CDS10 | 33135735 | 33135768 |
| chr_1 | g13889 | g13889.t1 | TSS | g13889.t1 | 33135922 | 33135922 |
Sequences
>g13889.t1 Gene=g13889 Length=5631
ATGAGTTCAGAAGATGAAAGAAGTGATGATTATGGTAATGAAGACACATTCCAGGATGAC
GGTTCAAAGAATCCTTTAAATGACGATGATGATGATTATGAGCCAGCTGACAATAAGAAA
AAATCAAAGAAGGGAAAGAAACGTAAGGCACGAGGTGAAGAAAAATCAAAAAAGCAAAAG
AAAAAAAAGCGCAGGAAGAATGATTCAGAAGAAGAAGAGGAAGCAGTAGAATCTCCCGAA
GAGTATACACACTCGAGCAAAAAAGGCCGCAAAAAGAAAGAAAAAGATCGCGATGAGCGC
TCATCAAGACGCCATCAACCAGCTGAAGAAGAACAAACAGCAGCTAATGATACACCATCA
GTTGAAGAAGTCTGCCAACAACTAGATTTGAAAGATGTCGATATTACATATGAAGATAGC
CACTATCAAAACTTAGTGACTTATAAAATGTTTACACAATATGTTCGTCCTATTTTGACG
AAAGAAAATCCAAAAGCACCCAGCAGCAAACTCATGATGTTGATTGCTGCCAAATGGCGT
GAGTTTTGTGAAGAAAATCCAAACTTGAAAGATGAAAATGAGGGCGATGAAGAAGAACAA
AAATCTGAAGAAGAGGAAGAAGAAGAAGCAGATGAACCAGAGCCAGAATATCAACCCAAA
TCAAGTAGATCAAGAGCATCTCGAAATGTTGAAAAACAATCGAAAGAAGAGCCAGAGGAT
GAGGATGATGATGATGATGGAAAAAAGAAAAGTAAACGCTCGAGTGCACGAACAAGCAAA
AGGGGAAAGAAGCAAAAAGTTCCAACATTGAAGATTCGTTTTGGTAAAAAGAAGGACGCA
AGTTCAGATGAAGAAAAGGACAGCAATGCTGGTAGCGAAGAGCGTGACAGTGATGCTGAA
TTTGAAAAAATGCTTTTGAAAACTCCTGAAGCATCAGATGATGAAGATAGCAGTCGACCA
GCTCCAAGTAATTCTTCTGCACCAAAAGGCAAGCCAAAAGTGAAAATTGGTAATAGAGGC
AAAAAGAAGAAGAGCAAAAAAGCTGAAACTATTGAACATCAAGACTATTGCGAAGTGTGT
CAACAAGGTGGAGAAATTATTCTCTGTGACACTTGTCCAAAAGCCTATCATCTCGTTTGT
TTAGAGCCCGAATTGGAAGAACCACCAGAAGGCAAATGGTGCTGTGCAAAATGTGAAGAA
GAAGGCAAGCGACCAGCTGAAGAAGAAGAAGAGGATGATGAACATCAAGATTTTTGTCGA
ATTTGCAAAGATGGAGGTGAATTATTGTGCTGTGATTCATGTCCAATGGCATATCATACT
TACTGTCTTGATCCACCACTAAGTGATTTACCAGAAACTTCATGGACTTGTCCTCGTTGC
AGTTGTCCGCCATTACCATATAAAGTTGCAAAAATCTTGAGCTGGCGTTGGACTGATGTG
AAAGTTGATGGTCCTTCAACTAGCTCTGCTCAGACAGTACGTCGTCGTGAATATTTTGTC
AAATGGCAAAATCAGAGCTATTGGCGATGCGATTGGGTCTCAGAAATGCAAATGGATGTT
TATCATAACATCATGTATCGTTCATATATTCGTAAACATGACATGGATGAACCACCGCGA
TTCGATGATCAACTAGATGAGCAAGATAATCGATATAAGCGAATTGAGCGTATGGCAAAG
GATTCAAAGTCTGAACGAGGTGATTTAGGTGTTAATCTCGAAGAAAAATATTATAAATAT
GGAGTTAAACCAGAATGGCTTATCATTCATCGTATCATCAATCACCGAACAATGCGAGAC
GGTCGTACACTTTATCTGATTAAATGGCGAGAATTGCCGTATGAGCAATCGACTTGGGAA
GATGAAGAAGAAGATATACCAGGACTAAAATTAGCTATTGAATACTATCAAGATCATCGT
GCGTATAATCTCGAAGGTGACCGCAGCTCTAAGAAAAAGAAGAAGGGTCGTCGTCGTACA
AAAGATGAGGTTGATGACGGAAGTGGGCAGAGACGTTTTAATCCACCTCCAGATCGTCCG
ACAACAGATTTGAAAAGAAAATGGGATCAACAGCCTGAGTACTTTGATGAATTAGGAATG
CAACTTCATCCATATCAGATTGAAGGTCTTAACTGGCTTAGATATTCATGGGCAAATGGC
ACTGATACAATATTAGCTGACGAAATGGGTTTAGGAAAAACAATTCAGACTGCTGCATTC
TTGTACTCACTGTATAAAGAAGGCCATTGCAAAGGGCCTTTTTTGGTGTCGGTACCATTG
TCAACACTCATAAATTGGGAGCGTGAATTTGAGCTTTGGGCGCCTGATTTTTATTGTGTC
ACATACATTGGAGACAAAGAATCACGTGCAGCAATTCGAGAACATGAATTGACTTTCCAC
GAAGATGCTGCACCGCGTGCCACTAGTAAAGGTGCAAGCAAATTGAGAACATCGAATGTG
AAATTTAACGTTCTTATTACAAGCTACGAGTTGATATCTATTGATAATGCATGCTTGTCA
TCAATCGATTGGAAAATTCTTGTGGTTGACGAAGCTCATAGATTAAAGTCGAATCAATCA
AAATTCTTCAAATTCCTTGCGAGTTACAATATTGATTATAAATTGCTACTTACTGGAACG
CCTTTACAAAATAATCTCGAAGAATTATATCATCTCCTGAACTTTTTGTGTCGAGATAAG
TTCAACGACCTTACTGCTTTCCAGAGCGAATTTGCTGATATTTCAAAAGAGGATCAGGTC
AAAAAACTTCATGAAATGCTTGGTCCACACATGTTGCGTCGTTTAAAAGCTGACGTACTG
AAAAATATGCCAACAAAGAGTGAATTTATTGTACGCGTTGAGCTTTCACCAATGCAAAAG
AAATACTACAAATATATTCTAACGAAAAATTATGAAGCACTCAACGCAAAAGGTGGAGGC
GGTGGCAATGCGTGTTCAATGCTCAATATTATGATGGATCTTAAAAAGTGTTGTAATCAT
CCATATTTGTTTCCAAGCGCTCAAGAGGAAGCTCCTCTAAGTGCAGGTGGTACTTATGAA
TTTCAAGCTCTGATGAAGGCTGCTGGAAAACTTGAGCTGCTAGAAAAGATGTTGAGAGTA
CTTAAAAAGCAAGGTCATCGTGTATTGATTTTCTCTCAAATGACAAAAATGTTGGATATT
CTTGAAGATTTTTTGGATGGAGCAGGCTATAAATATGAGCGTATCGATGGTGGCATTACG
GGTACATTACGTCAAGACGCCATTGATCGTTTTAATGCGCCAGGAGCTCAACAATTTGTC
TTTTTACTTTCAACTCGTGCTGGTGGTCTTGGAATAAATTTGGCTACTGCTGACACAGTC
ATTATTTATGATTCAGATTGGAATCCTCACAATGACATTCAAGCATTCTCTCGAGCCCAT
CGTATTGGACAGGCGAACAAGGTCATGATTTATCGCTTCGTGACAAGAAATTCAGTCGAA
GAAAGAGTGACGCAAGTTGCAAAGCGAAAAATGATGTTGACACATCTCGTTGTTCGTCCA
GGTATGGGCGGTAAAACAACAAACTTGACAAAACAGGAGCTAGATGACATTCTGAAATTC
GGCACAGAAGAACTTTTCAAAGATGAATCGGATAGTAAAGATGAGGCCATTCATTATGAT
GATGAAGCAGTTGAAAGGCTGTTGGATCGATCGAATCAAGGTGTTGAAGAAAAAGAAAAT
TGGGCCAATGACTATTTGTCAAGTTTCAAGGTTGCTTCTTATGCTACAAAAGACCAAGAT
GATGATGATGTAGAACGAGAAATTCTTGTAAAAGAAGAAAATAGTGATCCAAGTTATTGG
GTAAAACTCTTGCGTCATCATTATGAGCAGCATCAAGAAGATGTCGCTAGATCACTCGGC
AAGGGCAAACGTTTAAGAAAGCAAGTCAATTACACTGACAATGGTATAGTAACTGCCGAA
CCACGTGATGATAATTGGCAAGATGATGGAAGTGGCTATAGTGATTATAGTAGCGAAGAA
GATCGTGAAAATATGGATGACGATGAAATTGCAGCTCGTGCAAGAAACCGCCAACGAGAA
CGTGAACGACCTCTTCCTCCATTGTTGGCTCGTGTTGCAGGAAATATTGAAGTTCTCGGA
TTTAATGCCCGTCAACGAAAGGCATTCTTAAATACAATTATGCGCTACGGTATGCCACCA
CAAGATTGTTATGCCAGTCAATGGTTGATTCGTGATTTACGTGGAAAAACAGAACGACAA
TTTAAAGCATATGTTGCTCTATTCATGCGACATCTTTGTGAACCAGGAGCAGATAATTCA
GAGACATTTGCTGATGGAGTTCCTCGTGAAGGACTTAGCCGACAACATGTTCTTACTCGC
ATAGGTGTTATGTCATTGATTCGCAAAAAGGTTCATGAATTTGAATCTGTAAATGGAATT
TATTCAATGCCTGAAATTTTGAATGGCCCAGTTTTGCCTGTAAAAGTTAAAAAGACAGAA
TCAAATGCAGATGAGAACAAATTAGAAACTGACAAGGTCGAAGAAGTAAAAATTGAAGAC
ATTAAAAAAGAAGAGGTGAAGGCTGAAGTTAAAGATGAAAAAGAATCAAATGACGAGGTC
AAATCTGAAGAAAAGAAAGAAGGAGATGAAAATGAAAAGTCTAATACAAATGAGAAAAAA
GAAGAATCTGAAGAAAAAGTGAAGAAGGAAGAGACGAAAAAGGAGAATGATGACGATATA
GAAGAAGAAAATGAGGAAAAAGATCCACTGGCCGACACAACAAAGAAAGAGAAATCGGAA
GTTGTTATTAGTGACGATGATGACGTAGTGTGTCTCGATGAGGATAGCGATAAAAAGAAA
GGAGCAAAAGAGAATCCTGCTGATCGTAAATTTGCATTTAATATTGCTGATGGTGGTTTC
ACAGAGTTACACACATTATGGTTAAATGAAGAAAAAGTTGCTGTTCCAAATCGAATTTAC
AATATATGGCATCGAAGACACGATTATTGGCTTTTGGCTGGCACTGTTGCTCACGGATAT
GCTCGCTGGCAAGATATTCTCACAGATCAGCGCTTTGCAATTGTAAATGAACCATTTAAA
ATGGATGCAGGAAAAGGAAATTTCTTAGAAATTCGAAATAAGTTTCTTGCAAGACGTTTC
AAATTGCTAGAACAGGCACTCGTTATTGAAGAACAATTGAGGCGTGCTGCTTACTTGAAT
AGCTCCAACACTGATAATCTTACGTCACAACATCCAGGTGATTTTGATCCTGAACAATCT
GAACCAGAAATTCCATCGAAATCAACATCAAATAATCCAACGCTCCACAAGGTGCTTAAT
CAATTGGAAGAGCTTCTGAGCGATATGAAAAGCGATGTTTCACGACTTCCTGCGACACTC
GCCAACATCCCACCAGTTGCACAACGCCTTCAGGCAGCCGAAAAATCTATCCTATCACGC
ATTGCAACTAATCCCAAGAACTCAACTAATGCCGTTTCGACAATGTCTCTTTTCCCTAAT
GGCTACAAAGACTCTACCATTCGAGGCTTTGATTCGAATGAGACTGCTGCTAATTTCTCA
AATTTCAGACCTGAATTTAGTGTGCCGGGACAACGTCACGATAGCGATTAA
>g13889.t1 Gene=g13889 Length=1876
MSSEDERSDDYGNEDTFQDDGSKNPLNDDDDDYEPADNKKKSKKGKKRKARGEEKSKKQK
KKKRRKNDSEEEEEAVESPEEYTHSSKKGRKKKEKDRDERSSRRHQPAEEEQTAANDTPS
VEEVCQQLDLKDVDITYEDSHYQNLVTYKMFTQYVRPILTKENPKAPSSKLMMLIAAKWR
EFCEENPNLKDENEGDEEEQKSEEEEEEEADEPEPEYQPKSSRSRASRNVEKQSKEEPED
EDDDDDGKKKSKRSSARTSKRGKKQKVPTLKIRFGKKKDASSDEEKDSNAGSEERDSDAE
FEKMLLKTPEASDDEDSSRPAPSNSSAPKGKPKVKIGNRGKKKKSKKAETIEHQDYCEVC
QQGGEIILCDTCPKAYHLVCLEPELEEPPEGKWCCAKCEEEGKRPAEEEEEDDEHQDFCR
ICKDGGELLCCDSCPMAYHTYCLDPPLSDLPETSWTCPRCSCPPLPYKVAKILSWRWTDV
KVDGPSTSSAQTVRRREYFVKWQNQSYWRCDWVSEMQMDVYHNIMYRSYIRKHDMDEPPR
FDDQLDEQDNRYKRIERMAKDSKSERGDLGVNLEEKYYKYGVKPEWLIIHRIINHRTMRD
GRTLYLIKWRELPYEQSTWEDEEEDIPGLKLAIEYYQDHRAYNLEGDRSSKKKKKGRRRT
KDEVDDGSGQRRFNPPPDRPTTDLKRKWDQQPEYFDELGMQLHPYQIEGLNWLRYSWANG
TDTILADEMGLGKTIQTAAFLYSLYKEGHCKGPFLVSVPLSTLINWEREFELWAPDFYCV
TYIGDKESRAAIREHELTFHEDAAPRATSKGASKLRTSNVKFNVLITSYELISIDNACLS
SIDWKILVVDEAHRLKSNQSKFFKFLASYNIDYKLLLTGTPLQNNLEELYHLLNFLCRDK
FNDLTAFQSEFADISKEDQVKKLHEMLGPHMLRRLKADVLKNMPTKSEFIVRVELSPMQK
KYYKYILTKNYEALNAKGGGGGNACSMLNIMMDLKKCCNHPYLFPSAQEEAPLSAGGTYE
FQALMKAAGKLELLEKMLRVLKKQGHRVLIFSQMTKMLDILEDFLDGAGYKYERIDGGIT
GTLRQDAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAH
RIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKTTNLTKQELDDILKF
GTEELFKDESDSKDEAIHYDDEAVERLLDRSNQGVEEKENWANDYLSSFKVASYATKDQD
DDDVEREILVKEENSDPSYWVKLLRHHYEQHQEDVARSLGKGKRLRKQVNYTDNGIVTAE
PRDDNWQDDGSGYSDYSSEEDRENMDDDEIAARARNRQRERERPLPPLLARVAGNIEVLG
FNARQRKAFLNTIMRYGMPPQDCYASQWLIRDLRGKTERQFKAYVALFMRHLCEPGADNS
ETFADGVPREGLSRQHVLTRIGVMSLIRKKVHEFESVNGIYSMPEILNGPVLPVKVKKTE
SNADENKLETDKVEEVKIEDIKKEEVKAEVKDEKESNDEVKSEEKKEGDENEKSNTNEKK
EESEEKVKKEETKKENDDDIEEENEEKDPLADTTKKEKSEVVISDDDDVVCLDEDSDKKK
GAKENPADRKFAFNIADGGFTELHTLWLNEEKVAVPNRIYNIWHRRHDYWLLAGTVAHGY
ARWQDILTDQRFAIVNEPFKMDAGKGNFLEIRNKFLARRFKLLEQALVIEEQLRRAAYLN
SSNTDNLTSQHPGDFDPEQSEPEIPSKSTSNNPTLHKVLNQLEELLSDMKSDVSRLPATL
ANIPPVAQRLQAAEKSILSRIATNPKNSTNAVSTMSLFPNGYKDSTIRGFDSNETAANFS
NFRPEFSVPGQRHDSD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 35 | g13889.t1 | CDD | cd15531 | PHD1_CHD_II | 356 | 398 | 7.27176E-19 |
| 33 | g13889.t1 | CDD | cd15532 | PHD2_CHD_II | 418 | 460 | 5.41263E-25 |
| 36 | g13889.t1 | CDD | cd18662 | CD2_tandem_CHD3-4_like | 584 | 638 | 1.43406E-27 |
| 32 | g13889.t1 | CDD | cd17994 | DEXHc_CHD3_4_5 | 702 | 934 | 1.35625E-129 |
| 34 | g13889.t1 | CDD | cd18793 | SF2_C_SNF | 1029 | 1154 | 4.48132E-60 |
| 26 | g13889.t1 | Coils | Coil | Coil | 53 | 73 | - |
| 28 | g13889.t1 | Coils | Coil | Coil | 186 | 208 | - |
| 27 | g13889.t1 | Coils | Coil | Coil | 545 | 565 | - |
| 31 | g13889.t1 | Coils | Coil | Coil | 1024 | 1044 | - |
| 30 | g13889.t1 | Coils | Coil | Coil | 1523 | 1543 | - |
| 29 | g13889.t1 | Coils | Coil | Coil | 1546 | 1586 | - |
| 25 | g13889.t1 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 345 | 401 | 2.0E-17 |
| 24 | g13889.t1 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 402 | 468 | 4.6E-19 |
| 22 | g13889.t1 | Gene3D | G3DSA:2.40.50.40 | - | 476 | 561 | 6.2E-5 |
| 23 | g13889.t1 | Gene3D | G3DSA:2.40.50.40 | - | 579 | 639 | 5.8E-22 |
| 20 | g13889.t1 | Gene3D | G3DSA:3.40.50.10810 | - | 699 | 943 | 4.2E-196 |
| 21 | g13889.t1 | Gene3D | G3DSA:3.40.50.300 | - | 944 | 1174 | 4.2E-196 |
| 52 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 123 | - |
| 54 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 64 | - |
| 48 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 111 | - |
| 50 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 347 | - |
| 58 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 214 | - |
| 56 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 235 | - |
| 46 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 271 | - |
| 45 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 317 | - |
| 55 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 686 | - |
| 57 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1314 | 1348 | - |
| 47 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1322 | 1339 | - |
| 49 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1527 | 1601 | - |
| 51 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1527 | 1575 | - |
| 53 | g13889.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1744 | 1775 | - |
| 10 | g13889.t1 | PANTHER | PTHR45623:SF9 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3 | 34 | 1551 | 0.0 |
| 12 | g13889.t1 | PANTHER | PTHR45623 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 34 | 1551 | 0.0 |
| 11 | g13889.t1 | PANTHER | PTHR45623:SF9 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3 | 1499 | 1842 | 0.0 |
| 13 | g13889.t1 | PANTHER | PTHR45623 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 1499 | 1842 | 0.0 |
| 2 | g13889.t1 | Pfam | PF08073 | CHDNT (NUC034) domain | 134 | 187 | 1.1E-25 |
| 3 | g13889.t1 | Pfam | PF00628 | PHD-finger | 356 | 400 | 6.9E-10 |
| 4 | g13889.t1 | Pfam | PF00628 | PHD-finger | 418 | 462 | 5.4E-10 |
| 6 | g13889.t1 | Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 588 | 639 | 2.5E-14 |
| 7 | g13889.t1 | Pfam | PF00176 | SNF2 family N-terminal domain | 720 | 1003 | 1.0E-58 |
| 1 | g13889.t1 | Pfam | PF00271 | Helicase conserved C-terminal domain | 1031 | 1143 | 5.8E-20 |
| 9 | g13889.t1 | Pfam | PF06465 | Domain of Unknown Function (DUF1087) | 1260 | 1316 | 2.2E-23 |
| 5 | g13889.t1 | Pfam | PF06461 | Domain of Unknown Function (DUF1086) | 1353 | 1485 | 2.0E-56 |
| 8 | g13889.t1 | Pfam | PF08074 | CHDCT2 (NUC038) domain | 1660 | 1746 | 1.5E-44 |
| 63 | g13889.t1 | ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 354 | 401 | 10.62 |
| 64 | g13889.t1 | ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 416 | 463 | 10.371 |
| 60 | g13889.t1 | ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 467 | 541 | 8.847 |
| 59 | g13889.t1 | ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 587 | 647 | 12.431 |
| 62 | g13889.t1 | ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 714 | 899 | 23.373 |
| 61 | g13889.t1 | ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1033 | 1195 | 20.189 |
| 39 | g13889.t1 | SMART | SM00249 | PHD_3 | 356 | 399 | 6.6E-13 |
| 38 | g13889.t1 | SMART | SM00249 | PHD_3 | 418 | 461 | 1.4E-13 |
| 41 | g13889.t1 | SMART | SM00298 | chromo_7 | 466 | 534 | 4.3E-5 |
| 40 | g13889.t1 | SMART | SM00298 | chromo_7 | 585 | 641 | 1.1E-13 |
| 44 | g13889.t1 | SMART | SM00487 | ultradead3 | 698 | 907 | 2.1E-30 |
| 42 | g13889.t1 | SMART | SM00490 | helicmild6 | 1059 | 1143 | 9.0E-25 |
| 37 | g13889.t1 | SMART | SM01147 | DUF1087_2 | 1255 | 1319 | 2.5E-30 |
| 43 | g13889.t1 | SMART | SM01146 | DUF1086_2 | 1334 | 1488 | 3.0E-94 |
| 19 | g13889.t1 | SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 351 | 401 | 5.09E-15 |
| 18 | g13889.t1 | SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 411 | 475 | 4.32E-16 |
| 17 | g13889.t1 | SUPERFAMILY | SSF54160 | Chromo domain-like | 462 | 534 | 2.95E-12 |
| 16 | g13889.t1 | SUPERFAMILY | SSF54160 | Chromo domain-like | 567 | 639 | 2.38E-17 |
| 15 | g13889.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 689 | 934 | 8.57E-53 |
| 14 | g13889.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 936 | 1216 | 6.93E-70 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0070615 | NA | NA |
KEGG
Orthology
- This transcript has been annotated with K11643 (chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
