General information for g13991.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Kynurenine formamidase.
Parent gene
- The parent gene g13991 is located on chr_1: 33861825..33863683 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13991 | g13991.t1 | TSS | g13991.t1 | 33860855 | 33860855 |
| chr_1 | g13991 | g13991.t1 | isoform | g13991.t1 | 33860882 | 33861825 |
| chr_1 | g13991 | g13991.t1 | exon | g13991.t1.exon1 | 33860882 | 33860990 |
| chr_1 | g13991 | g13991.t1 | cds | g13991.t1.CDS1 | 33860882 | 33860990 |
| chr_1 | g13991 | g13991.t1 | exon | g13991.t1.exon2 | 33861065 | 33861825 |
| chr_1 | g13991 | g13991.t1 | cds | g13991.t1.CDS2 | 33861065 | 33861825 |
| chr_1 | g13991 | g13991.t1 | TTS | g13991.t1 | 33861850 | 33861850 |
Sequences
>g13991.t1 Gene=g13991 Length=870
ATGAGCTCCGTTGAAGATCTTGAAACAAAATATACACCATCTTTTTTTACCAAAAGATTC
TCAACATCCGAAGAATTGTTGAAAAATTTCATAACTGTTACTAATAAGGAATCCGAAAAA
AATCGATTAAATTATGATTGTCATTTAAATATCGCATATGGACCAACTAAACGTGAAAAA
CTCGATATTTATGGCGATGATCTTCCGAAATCTGCTCCTCTTTTTGTTTTTATACATGGC
GGCTATTGGAGGCAAGTTGACAAAGAGGGATCAGCATTTATGGTTAAACCACTATATGAA
AACGGAATACGAGTCATAACGATCGACTACGAATTGTGCCCAAATGTGACTCTTGAAGAA
ATTGTTGAGCAGGTTAAAAAATGTTTTAAATGGATTGCTCAGTACATAAAACAAAACGAG
ATAAGAAAAGTTGCCCTATCGGGTCACTGTGTTGGAGCACATTTACTTTGTTATGGAATT
ATTGAAGAATTTATGGAAACAATATCTTCTTCTGTTGAACTTCATGCGTTTTTCTTTTCC
GGAGTGTACTATCTTGAAGAATTGAGATATTTAAAGTCTACTAATGAAAATAACATCTTG
CATATTACTGATGAAAACTGTCGTCGTCTTTCACCACAATACATCGATTTCAACTATTTG
AAACATTTCAATTTTCATGCTCATGTGTTTGCTGGTGAATTTGAATCAGAAAAATTTCAT
GAGCATTCAAAAAAATTTGCAGAAGGTCCAATGAAAGACTTTTTAAAAACTTTTAAAATT
TTTGAAAAACTTGATCATTTTGATTTAGTTGAAAACATGTATGAAAGTAATTATGAGCTC
ACAAAACTAATCATTGAATGTCTCAAATAA
>g13991.t1 Gene=g13991 Length=289
MSSVEDLETKYTPSFFTKRFSTSEELLKNFITVTNKESEKNRLNYDCHLNIAYGPTKREK
LDIYGDDLPKSAPLFVFIHGGYWRQVDKEGSAFMVKPLYENGIRVITIDYELCPNVTLEE
IVEQVKKCFKWIAQYIKQNEIRKVALSGHCVGAHLLCYGIIEEFMETISSSVELHAFFFS
GVYYLEELRYLKSTNENNILHITDENCRRLSPQYIDFNYLKHFNFHAHVFAGEFESEKFH
EHSKKFAEGPMKDFLKTFKIFEKLDHFDLVENMYESNYELTKLIIECLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13991.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 31 | 286 | 0.0e+00 |
| 2 | g13991.t1 | PANTHER | PTHR23024 | ARYLACETAMIDE DEACETYLASE | 33 | 267 | 0.0e+00 |
| 3 | g13991.t1 | PANTHER | PTHR23024:SF554 | KYNURENINE FORMAMIDASE | 33 | 267 | 0.0e+00 |
| 1 | g13991.t1 | Pfam | PF07859 | alpha/beta hydrolase fold | 76 | 160 | 1.3e-05 |
| 4 | g13991.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 40 | 288 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01432 (arylformamidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
