General information for g13991.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Kynurenine formamidase.
Parent gene
- The parent gene g13991 is located on chr_1: 33861825..33863683 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13991 | g13991.t2 | TSS | g13991.t2 | 33860855 | 33860855 |
| chr_1 | g13991 | g13991.t2 | isoform | g13991.t2 | 33860981 | 33861825 |
| chr_1 | g13991 | g13991.t2 | exon | g13991.t2.exon1 | 33860981 | 33861825 |
| chr_1 | g13991 | g13991.t2 | cds | g13991.t2.CDS1 | 33861235 | 33861825 |
| chr_1 | g13991 | g13991.t2 | TTS | g13991.t2 | 33861850 | 33861850 |
Sequences
>g13991.t2 Gene=g13991 Length=845
ACTAATAAGGGTGATTAAATCTTTAAATATTTTAATTTTTAAAAATTTTATGATTAATTT
TACTTATTTTTGTATTTTAAATAGAATCCGAAAAAAATCGATTAAATTATGATTGTCATT
TAAATATCGCATATGGACCAACTAAACGTGAAAAACTCGATATTTATGGCGATGATCTTC
CGAAATCTGCTCCTCTTTTTGTTTTTATACATGGCGGCTATTGGAGGCAAGTTGACAAAG
AGGGATCAGCATTTATGGTTAAACCACTATATGAAAACGGAATACGAGTCATAACGATCG
ACTACGAATTGTGCCCAAATGTGACTCTTGAAGAAATTGTTGAGCAGGTTAAAAAATGTT
TTAAATGGATTGCTCAGTACATAAAACAAAACGAGATAAGAAAAGTTGCCCTATCGGGTC
ACTGTGTTGGAGCACATTTACTTTGTTATGGAATTATTGAAGAATTTATGGAAACAATAT
CTTCTTCTGTTGAACTTCATGCGTTTTTCTTTTCCGGAGTGTACTATCTTGAAGAATTGA
GATATTTAAAGTCTACTAATGAAAATAACATCTTGCATATTACTGATGAAAACTGTCGTC
GTCTTTCACCACAATACATCGATTTCAACTATTTGAAACATTTCAATTTTCATGCTCATG
TGTTTGCTGGTGAATTTGAATCAGAAAAATTTCATGAGCATTCAAAAAAATTTGCAGAAG
GTCCAATGAAAGACTTTTTAAAAACTTTTAAAATTTTTGAAAAACTTGATCATTTTGATT
TAGTTGAAAACATGTATGAAAGTAATTATGAGCTCACAAAACTAATCATTGAATGTCTCA
AATAA
>g13991.t2 Gene=g13991 Length=196
MVKPLYENGIRVITIDYELCPNVTLEEIVEQVKKCFKWIAQYIKQNEIRKVALSGHCVGA
HLLCYGIIEEFMETISSSVELHAFFFSGVYYLEELRYLKSTNENNILHITDENCRRLSPQ
YIDFNYLKHFNFHAHVFAGEFESEKFHEHSKKFAEGPMKDFLKTFKIFEKLDHFDLVENM
YESNYELTKLIIECLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g13991.t2 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 193 | 0 |
| 1 | g13991.t2 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 2 | 195 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
