General information for g13991.t28
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13991 is located on chr_1: 33861825..33863683 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13991 | g13991.t28 | TSS | g13991.t28 | 33860855 | 33860855 |
| chr_1 | g13991 | g13991.t28 | isoform | g13991.t28 | 33861825 | 33863630 |
| chr_1 | g13991 | g13991.t28 | exon | g13991.t28.exon1 | 33861825 | 33862233 |
| chr_1 | g13991 | g13991.t28 | exon | g13991.t28.exon2 | 33862309 | 33862369 |
| chr_1 | g13991 | g13991.t28 | exon | g13991.t28.exon3 | 33862427 | 33863630 |
| chr_1 | g13991 | g13991.t28 | cds | g13991.t28.CDS1 | 33863188 | 33863544 |
| chr_1 | g13991 | g13991.t28 | TTS | g13991.t28 | NA | NA |
Sequences
>g13991.t28 Gene=g13991 Length=1674
ATAAATTTTTATTTCATTATAAAGATCAAAACATTTTTCAAAATATATTTTTTAATGTAT
TTTTATCTGAAGGAAATAAATTAGACAATGACATATAAATGACAAAAAAAATTAGTAAAA
AACTCAAAGAGGCATCGAAACATCAATTTTTGAATGTGGCAACTTTGTATCATCTCCATT
AAGCATTTCAAAATCATCCTCTGAAATAAACTGTTCTGCTTTCACATCAATGATGCTAAC
AAGTTTAGTAGGTATGCTCTTCAAATCTTCATTTATGACCGTATCACAAATTCTTAAGTC
TTTTGAGGTGCATGGTTGCTGTTCTGACTTGATATCATCAATATCATCGTCTTCCTCATT
TTCTTCACTATCAATGCCTAAGTCACCATTCAATTGTTTTTGGACATAAGTTCCGTTTTC
TTCTTATAATGTTGTCGATTTTTTTCTAGTTTGGATTTCAGTTCATTATCATTATTCTTA
ACTTACTTTTTCTTTTCCATTCGCCCAATGTGTTGCAGATTCATATAGATCACTTGTTCT
TCGTTTCTTCAGTTGTAACCCAACATCGACAAAGGCTTGTTCTGCAATAAGTTTCAACTT
TTCCTTTTGTAGGTTGTATTTGTACTCTTTATTGCAGAAGTCTAGTAATCTATATACATC
ATAATAACTTGGAAATCCATTTTCTTTGTTAATTTTTTTTGTCAACTTCCTATTGAATTC
TTTGAAATCTGTTTTATTAAATTTTATTGGTTGTTTTACTTTTCTATGCGCATGTGTCGA
TTCTCCAGTAATTTCACAAATCTTTTCATAAATTTCAACGGCTTTTTTCTCACACAAGAC
TTTTCGCATATATGCTGATTTATCATCATCCCAATCAACCTCTTCTTCTTCAAGTGCCTC
AATTTTCTTTCTCAATTGTGCAAGTCCTTTATTTAATTTTTTCAAATATTTATCCTTCTT
TTCATCACCTGTTGTTTTGATTTCTATACCATTTTCTGACTGTTGAGATGTTGAAGCTTC
ATTCTCTGTAACGACCGGCACAATTGAATTTGTTTTCTTACGTGATTTAAGTTCATTTAT
TATGTCTTGAAGTTTTGAATATACACTTCTTGGATCTTTAAGTATAGCAAGCGCAGAATC
TTCAAGCATTTTTCTAAAGAATTTGGAAATTGCATATTCTGGATGAACCAAATGATAATG
TTTCAGCAGTTTTGATTTAATTATTTTTTTCATGTCATCATTTGGTTCAATTTGTTTGCA
AGCTTTAATGAAACCTTTAAGTTCTTTTGTTATTTCATTCTCTTGTTTTTCTTTTTGCTT
TGATGGACCAGCATTATTTTCTTCTTGTGTATCATTTGTATCTTGTGATGTTGTTAAATT
TGTTGAATTCTTTTTTTCATCATCATTGCTACTGGATCTTTCAATTGCTTTGCTTACTTC
ACCAATTTTTTGCGGCTGTATTCTTCGAATTTTTTCAGGTGGACTTGTATCATTATTTCC
ATTTGTTGTTGTATTTGGTCTTTTATTAGATGACACTGCTTGTATCTTATCAGTTGAATT
TGTTTCTGTGTTCTGTAATTTTTTTTAAAACGTAAACAGCGTTTTTCACAAAATTTAAAC
TATAAACAATGTGCATTTTTGCGAGTTTTTTGGATATTTAGCAGTTAACTCACC
>g13991.t28 Gene=g13991 Length=118
MSSFGSICLQALMKPLSSFVISFSCFSFCFDGPALFSSCVSFVSCDVVKFVEFFFSSSLL
LDLSIALLTSPIFCGCILRIFSGGLVSLFPFVVVFGLLLDDTACILSVEFVSVFCNFF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g13991.t28 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 37 | - |
| 8 | g13991.t28 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 18 | - |
| 9 | g13991.t28 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 19 | 30 | - |
| 12 | g13991.t28 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 31 | 37 | - |
| 6 | g13991.t28 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 38 | 52 | - |
| 10 | g13991.t28 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 53 | 73 | - |
| 4 | g13991.t28 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 74 | 79 | - |
| 11 | g13991.t28 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 80 | 99 | - |
| 5 | g13991.t28 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 100 | 118 | - |
| 3 | g13991.t28 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 15 | 37 | - |
| 2 | g13991.t28 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 50 | 72 | - |
| 1 | g13991.t28 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 77 | 99 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
