General information for g13991.t29
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13991 is located on chr_1: 33861825..33863683 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13991 | g13991.t29 | TSS | g13991.t29 | 33860855 | 33860855 |
| chr_1 | g13991 | g13991.t29 | isoform | g13991.t29 | 33861825 | 33863683 |
| chr_1 | g13991 | g13991.t29 | exon | g13991.t29.exon1 | 33861825 | 33862227 |
| chr_1 | g13991 | g13991.t29 | exon | g13991.t29.exon2 | 33862286 | 33862383 |
| chr_1 | g13991 | g13991.t29 | exon | g13991.t29.exon3 | 33862442 | 33863530 |
| chr_1 | g13991 | g13991.t29 | cds | g13991.t29.CDS1 | 33863188 | 33863530 |
| chr_1 | g13991 | g13991.t29 | exon | g13991.t29.exon4 | 33863636 | 33863683 |
| chr_1 | g13991 | g13991.t29 | cds | g13991.t29.CDS2 | 33863636 | 33863667 |
| chr_1 | g13991 | g13991.t29 | TTS | g13991.t29 | NA | NA |
Sequences
>g13991.t29 Gene=g13991 Length=1638
ATAAATTTTTATTTCATTATAAAGATCAAAACATTTTTCAAAATATATTTTTTAATGTAT
TTTTATCTGAAGGAAATAAATTAGACAATGACATATAAATGACAAAAAAAATTAGTAAAA
AACTCAAAGAGGCATCGAAACATCAATTTTTGAATGTGGCAACTTTGTATCATCTCCATT
AAGCATTTCAAAATCATCCTCTGAAATAAACTGTTCTGCTTTCACATCAATGATGCTAAC
AAGTTTAGTAGGTATGCTCTTCAAATCTTCATTTATGACCGTATCACAAATTCTTAAGTC
TTTTGAGGTGCATGGTTGCTGTTCTGACTTGATATCATCAATATCATCGTCTTCCTCATT
TTCTTCACTATCAATGCCTAAGTCACCATTCAATTGTTTTTGGACAATCTTACTATTCCA
AAACTTGTTCCGTTTTCTTCTTATAATGTTGTCGATTTTTTTCTAGTTTGGATTTCAGTT
CATTATCGTATTTAGCAGGATCTTTTTCTTTTCCATTCGCCCAATGTGTTGCAGATTCAT
ATAGATCACTTGTTCTTCGTTTCTTCAGTTGTAACCCAACATCGACAAAGGCTTGTTCTG
CAATAAGTTTCAACTTTTCCTTTTGTAGGTTGTATTTGTACTCTTTATTGCAGAAGTCTA
GTAATCTATATACATCATAATAACTTGGAAATCCATTTTCTTTGTTAATTTTTTTTGTCA
ACTTCCTATTGAATTCTTTGAAATCTGTTTTATTAAATTTTATTGGTTGTTTTACTTTTC
TATGCGCATGTGTCGATTCTCCAGTAATTTCACAAATCTTTTCATAAATTTCAACGGCTT
TTTTCTCACACAAGACTTTTCGCATATATGCTGATTTATCATCATCCCAATCAACCTCTT
CTTCTTCAAGTGCCTCAATTTTCTTTCTCAATTGTGCAAGTCCTTTATTTAATTTTTTCA
AATATTTATCCTTCTTTTCATCACCTGTTGTTTTGATTTCTATACCATTTTCTGACTGTT
GAGATGTTGAAGCTTCATTCTCTGTAACGACCGGCACAATTGAATTTGTTTTCTTACGTG
ATTTAAGTTCATTTATTATGTCTTGAAGTTTTGAATATACACTTCTTGGATCTTTAAGTA
TAGCAAGCGCAGAATCTTCAAGCATTTTTCTAAAGAATTTGGAAATTGCATATTCTGGAT
GAACCAAATGATAATGTTTCAGCAGTTTTGATTTAATTATTTTTTTCATGTCATCATTTG
GTTCAATTTGTTTGCAAGCTTTAATGAAACCTTTAAGTTCTTTTGTTATTTCATTCTCTT
GTTTTTCTTTTTGCTTTGATGGACCAGCATTATTTTCTTCTTGTGTATCATTTGTATCTT
GTGATGTTGTTAAATTTGTTGAATTCTTTTTTTCATCATCATTGCTACTGGATCTTTCAA
TTGCTTTGCTTACTTCACCAATTTTTTGCGGCTGTATTCTTCGAATTTTTTCAGGTGGAC
TTGTATCATTATTTCCATTTGTTGTTGTATTTGGTCTTTTATTAGATGACACTGCTTGTA
TCTTATCAGTTGAATTTGTTTCTGTGTTCTTGCATTATCTTCATCATCCGAATCAAGAAT
AATAATTGTTGGATCCAT
>g13991.t29 Gene=g13991 Length=124
MSSFGSICLQALMKPLSSFVISFSCFSFCFDGPALFSSCVSFVSCDVVKFVEFFFSSSLL
LDLSIALLTSPIFCGCILRIFSGGLVSLFPFVVVFGLLLDDTACILSVEFVSVFLHYLHH
PNQE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g13991.t29 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 45 | - |
| 8 | g13991.t29 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 15 | - |
| 9 | g13991.t29 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 16 | 27 | - |
| 12 | g13991.t29 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 28 | 45 | - |
| 6 | g13991.t29 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 46 | 60 | - |
| 11 | g13991.t29 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 61 | 81 | - |
| 4 | g13991.t29 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 82 | 87 | - |
| 10 | g13991.t29 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 118 | - |
| 5 | g13991.t29 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 119 | 124 | - |
| 3 | g13991.t29 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 15 | 37 | - |
| 2 | g13991.t29 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 50 | 72 | - |
| 1 | g13991.t29 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 77 | 99 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed