General information for g14004.t24
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14004 is located on chr_1: 33960971..33965851 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14004 | g14004.t24 | TTS | g14004.t24 | 33960516 | 33960516 |
| chr_1 | g14004 | g14004.t24 | isoform | g14004.t24 | 33960643 | 33961615 |
| chr_1 | g14004 | g14004.t24 | exon | g14004.t24.exon1 | 33960643 | 33960909 |
| chr_1 | g14004 | g14004.t24 | exon | g14004.t24.exon2 | 33960971 | 33961152 |
| chr_1 | g14004 | g14004.t24 | cds | g14004.t24.CDS1 | 33961083 | 33961152 |
| chr_1 | g14004 | g14004.t24 | exon | g14004.t24.exon3 | 33961316 | 33961615 |
| chr_1 | g14004 | g14004.t24 | cds | g14004.t24.CDS2 | 33961316 | 33961614 |
| chr_1 | g14004 | g14004.t24 | TSS | g14004.t24 | 33961727 | 33961727 |
Sequences
>g14004.t24 Gene=g14004 Length=749
AATGGCTCCTACAGCTAAAACGGCTTCAAAGGATAAGAAACTGCCTGCAGTTCCTGAATC
AAAGTTGAAAGATGGAAAACGTCGATTGGCATCTCGCGGAAAATTAATTCTCCGTAAACG
CATTATTCGATCGAAAGTTGCTCTTCGCCGTCGTCAAAATCTCGTTCGTGCTGAAAAATA
TACACGCACATATTTGAAATTGCAAAAGGATGTCATTGAGCAGGCTCGCGCTGCCAAGAA
AGCTGGAAATATTTATATCCCAGCATACCCGAAAGTTGCTTTTGTCATCCGTATTCGTGG
TCGCTCCAAAGGTAAAGAAGGTCTTGCAATTGCTTCGCTTGCGTCAAATCAACAATGCTA
CATTTGTTAAGTTGAATAAGGCCACACTCAATATGTTGAGAATTGCTCAACCTTATATCA
CTTATGGATATCCAACTCTCAAAACAGTTCGTGATTTGATCTATAAGAGAGGTTTCGTTA
AGCACGGAGGTCGACGCATTCCAATCACTGACAACTTTGTGATTGAACGCAAATTGAAAA
AAGGATACAATATTCAGTGTGTTGAAGATATGGTATATCAAATCTACACATGCGGCCGAG
TGTTCAAACAGGTAAACAACTTCCTCTGGCCATTCAAACTTAACACACCAACTGGTGGCT
GGCGTAAAAAGAACAACCACTTTGTTGAAGGAGGAGATTTCGGTAATCGTGAAGATAAAA
TCAATGAACTCGTTCAACGTATGGTTTAA
>g14004.t24 Gene=g14004 Length=122
MAPTAKTASKDKKLPAVPESKLKDGKRRLASRGKLILRKRIIRSKVALRRRQNLVRAEKY
TRTYLKLQKDVIEQARAAKKAGNIYIPAYPKVAFVIRIRGRSKGKEGLAIASLASNQQCY
IC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g14004.t24 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - |
| 2 | g14004.t24 | PANTHER | PTHR11524 | 60S RIBOSOMAL PROTEIN L7 | 8 | 103 | 2.7E-13 |
| 3 | g14004.t24 | PANTHER | PTHR11524:SF28 | - | 8 | 103 | 2.7E-13 |
| 1 | g14004.t24 | Pfam | PF08079 | Ribosomal L30 N-terminal domain | 17 | 88 | 1.9E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
