General information for g14005.t21
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14005 is located on chr_1: 33965851..33967151 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14005 | g14005.t21 | TSS | g14005.t21 | 33961789 | 33961789 |
| chr_1 | g14005 | g14005.t21 | isoform | g14005.t21 | 33961926 | 33967094 |
| chr_1 | g14005 | g14005.t21 | exon | g14005.t21.exon1 | 33961926 | 33961936 |
| chr_1 | g14005 | g14005.t21 | exon | g14005.t21.exon2 | 33962699 | 33962959 |
| chr_1 | g14005 | g14005.t21 | cds | g14005.t21.CDS1 | 33962881 | 33962959 |
| chr_1 | g14005 | g14005.t21 | exon | g14005.t21.exon3 | 33963026 | 33963109 |
| chr_1 | g14005 | g14005.t21 | cds | g14005.t21.CDS2 | 33963026 | 33963109 |
| chr_1 | g14005 | g14005.t21 | exon | g14005.t21.exon4 | 33965851 | 33966540 |
| chr_1 | g14005 | g14005.t21 | cds | g14005.t21.CDS3 | 33965851 | 33966540 |
| chr_1 | g14005 | g14005.t21 | exon | g14005.t21.exon5 | 33966594 | 33967094 |
| chr_1 | g14005 | g14005.t21 | cds | g14005.t21.CDS4 | 33966594 | 33966604 |
| chr_1 | g14005 | g14005.t21 | TTS | g14005.t21 | 33967151 | 33967151 |
Sequences
>g14005.t21 Gene=g14005 Length=1547
ATGCGTTTCGAACCAAATTTATCAGCCGCCATGGCTACTTTTACACAACAAGAAGAAAGT
TTTACAAACGACTCCAGCTTCTATACATACAACAAATTGACAGATCGGATATCAAGTACC
TTTGAAGATCTATTTATATTGAAGAACAACAACCAAGATAATGAATATGGAGTCAGCTCT
GTTATTCGAAAAAATGATAATGGGCCTTCCATCAGCCTCCGATATGACTACACCCACTGA
GGATATAATATTCGAAGACAACTTCGCTAATGAAATTTATATGAAATACGTTGATGAATC
CCCTGGCATTGATCTTTTTGCGGAAATGGAGCAAGATGATAAAATATATCTTGACGAGTT
GCAGTCGATAACAAACAAGATCGATTTACCCATAAACGATTTTGTTGCATCGATTGAAAA
CCCCGAAGAGTTTGAGAACATCGAAGGATCTAAAAGTGAGCAATTGCTACTTGATTTCAA
CTCCATTTTCGATGGTGTTGAAAATGAATTGACACCACCACAATCACCACCACAATTATT
TACTTCATCTTTGCAAGAACAACAACAATTTTCACCAAACAACATTCCAGCAACAGTCAA
TAATCAATATGAATTTTTCAACACTTATCAACCAGTTCAACAAGCATTAACACAAGGGGA
ACAGTTTATTTACATTCAAAATGCATCTCCTGCTGCATCCACTCCATCGCAAGGAAATGT
AGAAGTTTCTATCGTTTATGAAAACAACAATCAATCGATTATACCTAGTGATGAAATTAT
TTTTGATCCTGACAGCATTATCTCATCACCAACTGACATTCAACGCGAATTAGAAGTTGT
TGATGAATTAGTGCGTGCACATTCACGACAGACTTCGGATTATGAAGAATCAGCATCATC
ATCATGGTCTCCACGTAGTGAATATTCGAGTAGTGGATATTCACAATATGATGATGAACC
AGTTAAAAAATCAAAGTCTGGCTTGAAGGGCGTTACAAAGAAACGTACACGTGGCTATGG
AAGAAATCCAGAAGAAAAGAAATCGCCAAAAAGTTGAGGTCATTATGGACGAGGAGAAAA
TTTTAATGGATAAGAACAAGAGATTGACAACAGCCTATAAAGATACAAAGCGCGAAGTTA
AATACCTGAAAAGCTTGTTGCGAGATCTTTTCAAAGCTCGCGGATTCATTTAATTGTATT
TTTTTTTCATTTATATATATATAAGCACTTCTTGCTTATTTTTTGAATATTTTTCTTTGT
ATTTCATGGTACAAAATTTCTAAATTTTTTTTGTAAAATTATAAACAGTTTTACTCTTCA
ACAAAAAATCATATTTTTAATCATTAGTGTTAAGTTGTATTCGATTATTTCTTTAACAAC
AAACAAATATTTACTTATAGAACCTCAGTGTGCACCCTAACAAAAAATAGATGCCATTAA
AAGTTTGTAGTACAAAAGCTCCCTTGATAGTGCAACTTTATTAGAGTAATTGATATTTAT
TTATGCCGACATAAGTAAACTTGTGTCTAAAGTTAAAATGTTAGTGA
>g14005.t21 Gene=g14005 Length=287
MIMGLPSASDMTTPTEDIIFEDNFANEIYMKYVDESPGIDLFAEMEQDDKIYLDELQSIT
NKIDLPINDFVASIENPEEFENIEGSKSEQLLLDFNSIFDGVENELTPPQSPPQLFTSSL
QEQQQFSPNNIPATVNNQYEFFNTYQPVQQALTQGEQFIYIQNASPAASTPSQGNVEVSI
VYENNNQSIIPSDEIIFDPDSIISSPTDIQRELEVVDELVRAHSRQTSDYEESASSSWSP
RSEYSSSGYSQYDDEPVKKSKSGLKGVTKKRTRGYGRNPEEKKSPKS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g14005.t21 | MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 287 | - |
| 3 | g14005.t21 | MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 253 | - |
| 1 | g14005.t21 | MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 287 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
