General information for g14005.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14005 is located on chr_1: 33965851..33967151 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14005 | g14005.t23 | TSS | g14005.t23 | 33961789 | 33961789 |
| chr_1 | g14005 | g14005.t23 | isoform | g14005.t23 | 33961926 | 33967094 |
| chr_1 | g14005 | g14005.t23 | exon | g14005.t23.exon1 | 33961926 | 33961936 |
| chr_1 | g14005 | g14005.t23 | exon | g14005.t23.exon2 | 33962699 | 33962959 |
| chr_1 | g14005 | g14005.t23 | cds | g14005.t23.CDS1 | 33962881 | 33962959 |
| chr_1 | g14005 | g14005.t23 | exon | g14005.t23.exon3 | 33963026 | 33963109 |
| chr_1 | g14005 | g14005.t23 | cds | g14005.t23.CDS2 | 33963026 | 33963109 |
| chr_1 | g14005 | g14005.t23 | exon | g14005.t23.exon4 | 33965851 | 33965949 |
| chr_1 | g14005 | g14005.t23 | cds | g14005.t23.CDS3 | 33965851 | 33965949 |
| chr_1 | g14005 | g14005.t23 | exon | g14005.t23.exon5 | 33966052 | 33966695 |
| chr_1 | g14005 | g14005.t23 | cds | g14005.t23.CDS4 | 33966052 | 33966695 |
| chr_1 | g14005 | g14005.t23 | exon | g14005.t23.exon6 | 33966784 | 33967094 |
| chr_1 | g14005 | g14005.t23 | cds | g14005.t23.CDS5 | 33966784 | 33966843 |
| chr_1 | g14005 | g14005.t23 | TTS | g14005.t23 | 33967151 | 33967151 |
Sequences
>g14005.t23 Gene=g14005 Length=1410
ATGCGTTTCGAACCAAATTTATCAGCCGCCATGGCTACTTTTACACAACAAGAAGAAAGT
TTTACAAACGACTCCAGCTTCTATACATACAACAAATTGACAGATCGGATATCAAGTACC
TTTGAAGATCTATTTATATTGAAGAACAACAACCAAGATAATGAATATGGAGTCAGCTCT
GTTATTCGAAAAAATGATAATGGGCCTTCCATCAGCCTCCGATATGACTACACCCACTGA
GGATATAATATTCGAAGACAACTTCGCTAATGAAATTTATATGAAATACGTTGATGAATC
CCCTGGCATTGATCTTTTTGCGGAAATGGAGCAAGATGATAAAATATATCTTGACGAGTT
GCAGTCGATAACAAACAAGATCGATTTACCCATAAACGATTTTGTTGCATCGATTGAAAA
CCCCGAAGAGTTTGAGAACATCGAAGGATCTAAAAAACAACAACAATTTTCACCAAACAA
CATTCCAGCAACAGTCAATAATCAATATGAATTTTTCAACACTTATCAACCAGTTCAACA
AGCATTAACACAAGGGGAACAGTTTATTTACATTCAAAATGCATCTCCTGCTGCATCCAC
TCCATCGCAAGGAAATGTAGAAGTTTCTATCGTTTATGAAAACAACAATCAATCGATTAT
ACCTAGTGATGAAATTATTTTTGATCCTGACAGCATTATCTCATCACCAACTGACATTCA
ACGCGAATTAGAAGTTGTTGATGAATTAGTGCGTGCACATTCACGACAGACTTCGGATTA
TGAAGAATCAGCATCATCATCATGGTCTCCACGTAGTGAATATTCGAGTAGTGGATATTC
ACAATATGATGATGAACCAGTTAAAAAATCAAAGTCTGGCTTGAAGGGCGTTACAAAGAA
ACGTACACGTGGCTATGGAAGAAATCCAGAAGAAAAGAAATCGCGTAAGAAGGAACAAAA
TAAGAATGCTGCTACTCGCTATCGTATGAAGAAGAAGCAAAAAGTTGAGGTCATTATGGA
CGAGGAGAAAATTTTAATGGATAAGAACAAGAGATTGACAACAGCCTATAAAGATACAAA
GCGCGAAGTTAAATACCTGTATTTTTTGAATATTTTTCTTTGTATTTCATGGTACAAAAT
TTCTAAATTTTTTTTGTAAAATTATAAACAGTTTTACTCTTCAACAAAAAATCATATTTT
TAATCATTAGTGTTAAGTTGTATTCGATTATTTCTTTAACAACAAACAAATATTTACTTA
TAGAACCTCAGTGTGCACCCTAACAAAAAATAGATGCCATTAAAAGTTTGTAGTACAAAA
GCTCCCTTGATAGTGCAACTTTATTAGAGTAATTGATATTTATTTATGCCGACATAAGTA
AACTTGTGTCTAAAGTTAAAATGTTAGTGA
>g14005.t23 Gene=g14005 Length=321
MIMGLPSASDMTTPTEDIIFEDNFANEIYMKYVDESPGIDLFAEMEQDDKIYLDELQSIT
NKIDLPINDFVASIENPEEFENIEGSKKQQQFSPNNIPATVNNQYEFFNTYQPVQQALTQ
GEQFIYIQNASPAASTPSQGNVEVSIVYENNNQSIIPSDEIIFDPDSIISSPTDIQRELE
VVDELVRAHSRQTSDYEESASSSWSPRSEYSSSGYSQYDDEPVKKSKSGLKGVTKKRTRG
YGRNPEEKKSRKKEQNKNAATRYRMKKKQKVEVIMDEEKILMDKNKRLTTAYKDTKREVK
YLYFLNIFLCISWYKISKFFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g14005.t23 | CDD | cd14692 | bZIP_ATF4 | 247 | 303 | 4.032E-18 |
| 4 | g14005.t23 | Gene3D | G3DSA:1.20.5.170 | - | 247 | 306 | 4.4E-16 |
| 11 | g14005.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 263 | - |
| 12 | g14005.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 219 | - |
| 13 | g14005.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 263 | - |
| 2 | g14005.t23 | PANTHER | PTHR13044 | ACTIVATING TRANSCRIPTION FACTOR ATF 4/5 | 94 | 302 | 6.1E-14 |
| 1 | g14005.t23 | Pfam | PF00170 | bZIP transcription factor | 246 | 302 | 1.3E-6 |
| 5 | g14005.t23 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 300 | - |
| 7 | g14005.t23 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 301 | 320 | - |
| 6 | g14005.t23 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 321 | 321 | - |
| 10 | g14005.t23 | ProSitePatterns | PS00036 | Basic-leucine zipper (bZIP) domain signature. | 251 | 266 | - |
| 14 | g14005.t23 | ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 246 | 302 | 9.393 |
| 9 | g14005.t23 | SMART | SM00338 | brlzneu | 244 | 308 | 1.9E-10 |
| 3 | g14005.t23 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 248 | 303 | 1.19E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
