General information for g14017.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Branched-chain-amino-acid aminotransferase.
Parent gene
- The parent gene g14017 is located on chr_1: 34092319..34093211 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14017 | g14017.t10 | isoform | g14017.t10 | 34091104 | 34091995 |
| chr_1 | g14017 | g14017.t10 | exon | g14017.t10.exon1 | 34091104 | 34091112 |
| chr_1 | g14017 | g14017.t10 | exon | g14017.t10.exon2 | 34091460 | 34091995 |
| chr_1 | g14017 | g14017.t10 | cds | g14017.t10.CDS1 | 34091472 | 34091993 |
| chr_1 | g14017 | g14017.t10 | TTS | g14017.t10 | 34092658 | 34092658 |
| chr_1 | g14017 | g14017.t10 | TSS | g14017.t10 | NA | NA |
Sequences
>g14017.t10 Gene=g14017 Length=545
GCTGTTGAGCTGTTTGAAGGCATGAAAGCATTCAGAGGCGTTGATGGGCGTATTCGTCTA
TTCCGACCTGAAATGAATATGGCTCGAATGAATGCAAGTGCACAACGCTCAGGTCTCCCC
ACTTTTGAACCTGAAGAATTTGTTAAATGCATTTCAAGACTCGTCTCAATTGACCAGGAA
TGGGTGCCGCATACAGAATCTGCAAGCTTATACATTCGACCAACACTTATTGGAATTGAA
CCAACTCTTGGTGTTGCATCGTCTGAATCAGCACTATTGTATACGATTTTGTCACCTGTT
GGTGGATATTTTGCGGGAAATAGTGGCACATCAACTGGTGTTTCTTTATTAGCAGATCCT
CAATATACGAGATCATGGCCGGGTGGAGTTGGTGATAGAAAAATGGGCTCAAACTATGCA
CCAACTATTCATGTGCAAAAAGAAGCTTCTAAACAAGGTTTTCAACAAGTATTGTGGTTA
TATGGTGATGATCATCAACTAACAGAAGTTGGTACAATGAACATTTTTGTTCTATTAATT
AATGA
>g14017.t10 Gene=g14017 Length=174
MKAFRGVDGRIRLFRPEMNMARMNASAQRSGLPTFEPEEFVKCISRLVSIDQEWVPHTES
ASLYIRPTLIGIEPTLGVASSESALLYTILSPVGGYFAGNSGTSTGVSLLADPQYTRSWP
GGVGDRKMGSNYAPTIHVQKEASKQGFQQVLWLYGDDHQLTEVGTMNIFVLLIN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g14017.t10 | Gene3D | G3DSA:3.30.470.10 | - | 1 | 103 | 0 |
| 5 | g14017.t10 | Gene3D | G3DSA:3.20.10.10 | - | 104 | 174 | 0 |
| 2 | g14017.t10 | PANTHER | PTHR11825 | SUBGROUP IIII AMINOTRANSFERASE | 1 | 173 | 0 |
| 1 | g14017.t10 | Pfam | PF01063 | Amino-transferase class IV | 7 | 170 | 0 |
| 3 | g14017.t10 | SUPERFAMILY | SSF56752 | D-aminoacid aminotransferase-like PLP-dependent enzymes | 1 | 172 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
