General information for g14017.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Branched-chain-amino-acid aminotransferase.
Parent gene
- The parent gene g14017 is located on chr_1: 34092319..34093211 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14017 | g14017.t6 | TSS | g14017.t6 | 34086713 | 34086713 |
| chr_1 | g14017 | g14017.t6 | isoform | g14017.t6 | 34086920 | 34092207 |
| chr_1 | g14017 | g14017.t6 | exon | g14017.t6.exon1 | 34086920 | 34086937 |
| chr_1 | g14017 | g14017.t6 | cds | g14017.t6.CDS1 | 34086920 | 34086937 |
| chr_1 | g14017 | g14017.t6 | exon | g14017.t6.exon2 | 34090507 | 34090731 |
| chr_1 | g14017 | g14017.t6 | cds | g14017.t6.CDS2 | 34090507 | 34090731 |
| chr_1 | g14017 | g14017.t6 | exon | g14017.t6.exon3 | 34090903 | 34091106 |
| chr_1 | g14017 | g14017.t6 | cds | g14017.t6.CDS3 | 34090903 | 34091106 |
| chr_1 | g14017 | g14017.t6 | exon | g14017.t6.exon4 | 34091460 | 34092003 |
| chr_1 | g14017 | g14017.t6 | cds | g14017.t6.CDS4 | 34091460 | 34092003 |
| chr_1 | g14017 | g14017.t6 | exon | g14017.t6.exon5 | 34092066 | 34092207 |
| chr_1 | g14017 | g14017.t6 | cds | g14017.t6.CDS5 | 34092066 | 34092205 |
| chr_1 | g14017 | g14017.t6 | TTS | g14017.t6 | 34093207 | 34093207 |
Sequences
>g14017.t6 Gene=g14017 Length=1133
ATGAGCATTCACGGCAAGACAATGCTACCTTACATTGTAAGGAAAGTCTTTGAAATCCAA
CATAAACTATATCAGCAACAAATTCGTGCATGCAGCACTGGTCGATTGCAAGAAGCATTA
AAGATCGAAGAAGAGCAAGAATTTCCAAAAATCAATGAAATCAAGCAGCCTGAAGAGTCG
TCATTTTACTATCCTGTCGACAAGAAATTCAAACACGACCCCGATATCGGAGAACAATTT
TCATATTCACAATTGCGTGTTCGTTTGGCGGGACCTCATCAATTGCAACCTAAACCTGAA
GCTGATGATCTGCAGTTTGGAAAACTCTTTACTGATCATATGTTTAAAGTCGCTTACCAT
AAGCGTCTGGGTGGTTGGCAAGTACCCGAAATTATGCCACTCGAAAATCTTGTTTTACAT
CCTGCAGCTAAAGTTTTACATTATGCTCTGTTTGAAGGCATGAAAGCATTCAGAGGCGTT
GATGGGCGTATTCGTCTATTCCGACCTGAAATGAATATGGCTCGAATGAATGCAAGTGCA
CAACGCTCAGGTCTCCCCACTTTTGAACCTGAAGAATTTGTTAAATGCATTTCAAGACTC
GTCTCAATTGACCAGGAATGGGTGCCGCATACAGAATCTGCAAGCTTATACATTCGACCA
ACACTTATTGGAATTGAACCAACTCTTGGTGTTGCATCGTCTGAATCAGCACTATTGTAT
ACGATTTTGTCACCTGTTGGTGGATATTTTGCGGGAAATAGTGGCACATCAACTGGTGTT
TCTTTATTAGCAGATCCTCAATATACGAGATCATGGCCGGGTGGAGTTGGTGATAGAAAA
ATGGGCTCAAACTATGCACCAACTATTCATGTGCAAAAAGAAGCTTCTAAACAAGGTTTT
CAACAAGTATTGTGGTTATATGGTGATGATCATCAACTAACAGAAGTTGGTACAATGAAC
ATTTTTGTTCTATTAATTAATGATCGTGGAGAACGTGAACTTGTTACACCACCATTAAAT
GGTTTAATTTTACCTGGAATTGTTCGTCACTCAATTCTCAATCTTGCTCGCGAATGGAAT
CAAGTTAAAGTGACTGAACGTAAAATCACAATGGCTGAAGTTAAGAAACTAGT
>g14017.t6 Gene=g14017 Length=377
MSIHGKTMLPYIVRKVFEIQHKLYQQQIRACSTGRLQEALKIEEEQEFPKINEIKQPEES
SFYYPVDKKFKHDPDIGEQFSYSQLRVRLAGPHQLQPKPEADDLQFGKLFTDHMFKVAYH
KRLGGWQVPEIMPLENLVLHPAAKVLHYALFEGMKAFRGVDGRIRLFRPEMNMARMNASA
QRSGLPTFEPEEFVKCISRLVSIDQEWVPHTESASLYIRPTLIGIEPTLGVASSESALLY
TILSPVGGYFAGNSGTSTGVSLLADPQYTRSWPGGVGDRKMGSNYAPTIHVQKEASKQGF
QQVLWLYGDDHQLTEVGTMNIFVLLINDRGERELVTPPLNGLILPGIVRHSILNLAREWN
QVKVTERKITMAEVKKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14017.t6 | CDD | cd01557 | BCAT_beta_family | 139 | 377 | 9.99562E-109 |
| 5 | g14017.t6 | Gene3D | G3DSA:3.30.470.10 | - | 104 | 253 | 1.6E-120 |
| 6 | g14017.t6 | Gene3D | G3DSA:3.20.10.10 | - | 254 | 376 | 1.6E-120 |
| 2 | g14017.t6 | PANTHER | PTHR11825 | SUBGROUP IIII AMINOTRANSFERASE | 70 | 376 | 7.6E-132 |
| 1 | g14017.t6 | Pfam | PF01063 | Amino-transferase class IV | 150 | 376 | 1.7E-27 |
| 4 | g14017.t6 | ProSitePatterns | PS00770 | Aminotransferases class-IV signature. | 315 | 349 | - |
| 3 | g14017.t6 | SUPERFAMILY | SSF56752 | D-aminoacid aminotransferase-like PLP-dependent enzymes | 92 | 376 | 8.76E-84 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004084 | branched-chain-amino-acid transaminase activity | MF |
| GO:0009081 | branched-chain amino acid metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
