General information for g14017.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Branched-chain-amino-acid aminotransferase.
Parent gene
- The parent gene g14017 is located on chr_1: 34092319..34093211 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14017 | g14017.t9 | isoform | g14017.t9 | 34090724 | 34092502 |
| chr_1 | g14017 | g14017.t9 | exon | g14017.t9.exon1 | 34090724 | 34090731 |
| chr_1 | g14017 | g14017.t9 | exon | g14017.t9.exon2 | 34090903 | 34091112 |
| chr_1 | g14017 | g14017.t9 | cds | g14017.t9.CDS1 | 34090999 | 34091112 |
| chr_1 | g14017 | g14017.t9 | exon | g14017.t9.exon3 | 34091460 | 34092003 |
| chr_1 | g14017 | g14017.t9 | cds | g14017.t9.CDS2 | 34091460 | 34092003 |
| chr_1 | g14017 | g14017.t9 | exon | g14017.t9.exon4 | 34092066 | 34092220 |
| chr_1 | g14017 | g14017.t9 | cds | g14017.t9.CDS3 | 34092066 | 34092220 |
| chr_1 | g14017 | g14017.t9 | exon | g14017.t9.exon5 | 34092314 | 34092502 |
| chr_1 | g14017 | g14017.t9 | cds | g14017.t9.CDS4 | 34092314 | 34092502 |
| chr_1 | g14017 | g14017.t9 | TTS | g14017.t9 | 34093207 | 34093207 |
| chr_1 | g14017 | g14017.t9 | TSS | g14017.t9 | NA | NA |
Sequences
>g14017.t9 Gene=g14017 Length=1106
AATTTTCATATTCACAATTGCGTGTTCGTTTGGCGGGACCTCATCAATTGCAACCTAAAC
CTGAAGCTGATGATCTGCAGTTTGGAAAACTCTTTACTGATCATATGTTTAAAGTCGCTT
ACCATAAGCGTCTGGGTGGTTGGCAAGTACCCGAAATTATGCCACTCGAAAATCTTGTTT
TACATCCTGCAGCTAAAGTTTTACATTATGCTGTTGAGCTGTTTGAAGGCATGAAAGCAT
TCAGAGGCGTTGATGGGCGTATTCGTCTATTCCGACCTGAAATGAATATGGCTCGAATGA
ATGCAAGTGCACAACGCTCAGGTCTCCCCACTTTTGAACCTGAAGAATTTGTTAAATGCA
TTTCAAGACTCGTCTCAATTGACCAGGAATGGGTGCCGCATACAGAATCTGCAAGCTTAT
ACATTCGACCAACACTTATTGGAATTGAACCAACTCTTGGTGTTGCATCGTCTGAATCAG
CACTATTGTATACGATTTTGTCACCTGTTGGTGGATATTTTGCGGGAAATAGTGGCACAT
CAACTGGTGTTTCTTTATTAGCAGATCCTCAATATACGAGATCATGGCCGGGTGGAGTTG
GTGATAGAAAAATGGGCTCAAACTATGCACCAACTATTCATGTGCAAAAAGAAGCTTCTA
AACAAGGTTTTCAACAAGTATTGTGGTTATATGGTGATGATCATCAACTAACAGAAGTTG
GTACAATGAACATTTTTGTTCTATTAATTAATGATCGTGGAGAACGTGAACTTGTTACAC
CACCATTAAATGGTTTAATTTTACCTGGAATTGTTCGTCACTCAATTCTCAATCTTGCTC
GCGAATGGAATCAAGTTAAAGTGACTGAACGTAAAATCACAATGGCTGAAGTTAAGAAAC
TAGTCTATGAAAATAGAGTTCTCGAAATGTTTGGTGCTGGAACAGCATGTGTTGTATCAC
CTATCGAAAGAATCTTTTACATGAACGAGAATTTGCTCATTCCAACGATGGAGAATAGTG
ATGCAGTATGGCGTACAATGCGCAATACCCTTCTCGACATTCAATATGGTCGAGTTAAGC
ATCCTTGGGCAATAGAAATTGATTAA
>g14017.t9 Gene=g14017 Length=333
MFKVAYHKRLGGWQVPEIMPLENLVLHPAAKVLHYAVELFEGMKAFRGVDGRIRLFRPEM
NMARMNASAQRSGLPTFEPEEFVKCISRLVSIDQEWVPHTESASLYIRPTLIGIEPTLGV
ASSESALLYTILSPVGGYFAGNSGTSTGVSLLADPQYTRSWPGGVGDRKMGSNYAPTIHV
QKEASKQGFQQVLWLYGDDHQLTEVGTMNIFVLLINDRGERELVTPPLNGLILPGIVRHS
ILNLAREWNQVKVTERKITMAEVKKLVYENRVLEMFGAGTACVVSPIERIFYMNENLLIP
TMENSDAVWRTMRNTLLDIQYGRVKHPWAIEID
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14017.t9 | CDD | cd01557 | BCAT_beta_family | 26 | 322 | 2.14177E-124 |
| 4 | g14017.t9 | Gene3D | G3DSA:3.30.470.10 | - | 1 | 328 | 3.9E-141 |
| 5 | g14017.t9 | Gene3D | G3DSA:3.20.10.10 | - | 139 | 320 | 3.9E-141 |
| 2 | g14017.t9 | PANTHER | PTHR11825 | SUBGROUP IIII AMINOTRANSFERASE | 1 | 332 | 3.1E-151 |
| 6 | g14017.t9 | PIRSF | PIRSF006468 | BCAT1 | 1 | 333 | 1.4E-120 |
| 1 | g14017.t9 | Pfam | PF01063 | Amino-transferase class IV | 39 | 290 | 3.1E-29 |
| 8 | g14017.t9 | ProSitePatterns | PS00770 | Aminotransferases class-IV signature. | 204 | 238 | - |
| 3 | g14017.t9 | SUPERFAMILY | SSF56752 | D-aminoacid aminotransferase-like PLP-dependent enzymes | 10 | 329 | 1.03E-97 |
| 9 | g14017.t9 | TIGRFAM | TIGR01123 | ilvE_II: branched-chain amino acid aminotransferase | 13 | 328 | 1.7E-86 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004084 | branched-chain-amino-acid transaminase activity | MF |
| GO:0009081 | branched-chain amino acid metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00826 (branched-chain amino acid aminotransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
