General information for g14059.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ribonuclease P protein subunit p30.
Parent gene
- The parent gene g14059 is located on chr_1: 34451956..34453106 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14059 | g14059.t1 | TSS | g14059.t1 | 34450934 | 34450934 |
| chr_1 | g14059 | g14059.t1 | isoform | g14059.t1 | 34450999 | 34451956 |
| chr_1 | g14059 | g14059.t1 | exon | g14059.t1.exon1 | 34450999 | 34451092 |
| chr_1 | g14059 | g14059.t1 | cds | g14059.t1.CDS1 | 34450999 | 34451092 |
| chr_1 | g14059 | g14059.t1 | exon | g14059.t1.exon2 | 34451160 | 34451956 |
| chr_1 | g14059 | g14059.t1 | cds | g14059.t1.CDS2 | 34451160 | 34451956 |
| chr_1 | g14059 | g14059.t1 | TTS | g14059.t1 | 34451964 | 34451964 |
Sequences
>g14059.t1 Gene=g14059 Length=891
ATGATAAAAATTGCAAATGGCTTTTGTGATCTTTGTATTCCATATAATGAGAAGAAAGAG
GTGATGCTAAGCATATTTAAGGAACTCATAGAAATTGGCTATAAAAATGTCGCAATTGAG
CAAATTTATAGTCATGAATCATTAGTTTCAAAGAATGGTTCTGATTTAATTCCTACTCCA
GTAAATCTCAATGAATATGAAGAAGTTACAGAGAGAAAACTACATCTCTTCAACAGATTG
ACAGTCATTTATTCTGATCCTTCAGTCTCACACGCCTGTTCACGATCACCAAACTTCAAG
AAGTATCATATAATCGCTGCTCTTCCAACAACAGATACAGCGTTTCAGCATAGCTGCCAA
TCATTCATTGGTGATATTATTACATACAATTCGGATACCATCAAAATGCGATTCACAAGA
AAGTTTTACTATTTAGCTATCAGAAGAAATATGTTTTTTGAAATCAAATACTCGCCAGTA
ATTGTAGATGATAATGAAAGACGAGCAACGATTACGAGAGCTCAACTATATCATATGATA
GGAAAGTCAAGAGGAATAATATTTACAAGTGAAGCGAAAGATTCATATCAAGTGCGAAGT
CCTTATGATGTTGGATGTCTTGGTTTTATTTTTGGTTTAAGTGAAGAGCAAGGAAGAGCT
GCAGTGTCAACTGTTAGTAGAAAAGTGCTATTAGCGGCAGAATGTAGACGTTTAGGTAAA
ACACCGGTTTTAATGAAATATGAAGAAATCGATACATCTACATCTGAAGAAGAAGAAGAT
GAAAGTGAAGAGGAAATGGATATAGATGAATCATCTGATTGCTCTATAAAAAAACGAAAG
CAAGCATGTTTAAACATGAAAAGCAAAAATAAACGAGTAAAAACCTCATAA
>g14059.t1 Gene=g14059 Length=296
MIKIANGFCDLCIPYNEKKEVMLSIFKELIEIGYKNVAIEQIYSHESLVSKNGSDLIPTP
VNLNEYEEVTERKLHLFNRLTVIYSDPSVSHACSRSPNFKKYHIIAALPTTDTAFQHSCQ
SFIGDIITYNSDTIKMRFTRKFYYLAIRRNMFFEIKYSPVIVDDNERRATITRAQLYHMI
GKSRGIIFTSEAKDSYQVRSPYDVGCLGFIFGLSEEQGRAAVSTVSRKVLLAAECRRLGK
TPVLMKYEEIDTSTSEEEEDESEEEMDIDESSDCSIKKRKQACLNMKSKNKRVKTS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14059.t1 | Gene3D | G3DSA:3.20.20.140 | - | 18 | 232 | 6.0E-32 |
| 5 | g14059.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 275 | - |
| 4 | g14059.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 270 | - |
| 2 | g14059.t1 | PANTHER | PTHR13031 | RIBONUCLEASE P SUBUNIT P30 | 8 | 274 | 1.2E-55 |
| 1 | g14059.t1 | Pfam | PF01876 | RNase P subunit p30 | 9 | 224 | 4.0E-50 |
| 3 | g14059.t1 | SUPERFAMILY | SSF89550 | PHP domain-like | 8 | 230 | 9.81E-28 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
| GO:0004526 | ribonuclease P activity | MF |
| GO:0008033 | tRNA processing | BP |
KEGG
Orthology
- This transcript has been annotated with K03539 (ribonuclease P/MRP protein subunit RPP1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
