Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acyl-CoA desaturase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1406 g1406.t5 TTS g1406.t5 10674847 10674847
chr_3 g1406 g1406.t5 isoform g1406.t5 10675030 10676482
chr_3 g1406 g1406.t5 exon g1406.t5.exon1 10675030 10675301
chr_3 g1406 g1406.t5 exon g1406.t5.exon2 10675362 10675469
chr_3 g1406 g1406.t5 exon g1406.t5.exon3 10676070 10676482
chr_3 g1406 g1406.t5 cds g1406.t5.CDS1 10676099 10676392
chr_3 g1406 g1406.t5 TSS g1406.t5 NA NA

Sequences

>g1406.t5 Gene=g1406 Length=793
GAATGGACAAGAGATCATCGTGTCCATCACAAATTTACTGATACAAATGCAGATCCACAT
AATGCACGTCGTGGTTTTTTCTTCTCACATATGGGCTGGTTGTTGTGCAAAAAACATCCG
GATGTTAAAAAGTTTGGTGCAAGAGTTAGCATGGCTGATTTAGAAGCTGATCCAATCATT
ATGTTTCAACATAGACATTACCTTAAGCTCATGTTGTTCTTCAGTCTTATTTTGCCAGTT
TTTATTCCGTGGTATTTCTGGGGTGAAAGTTTTTGGGCTTCATTTTTAATTGCTGGCGTT
TTACGTTACATTACTTCACTTCATATTACATGGCTTATTAATTCTGCTGCACATACTTAT
GGAATGAAACCTTTTGATAAGTAAATGAGACTTTTTTGATTTCTAGTTGAAATGCTGGCA
TAATTATCATCACGTCTTTCCTTATGATTACAAAACTTCAGAATTAGGATTTTACGTGTT
CAACTTAACGACAGCTTTTATTGATTTTTTCTCACTGTTTGGATGGACATATGACCTTAA
AACAGTGTCACCTGAAATGATCAGACGTCGTGTGTTGAGAACAGGTGATGGAAGTCATCC
AGCATCAAAAGAAATGGATACAAAGGAATTATTGAATAAATTTATCCTAAGTCAAGCAAT
TGACAAAAATGGAAATATAATTCATAATGAAGAAGACTCAATATGGGGATTTAATGATGA
AATGCTTCCAGCTGAAGATAGAAAATACATTAAAATTATTAACAAACATTCAAATTTAAA
GAAAAGAAATTAA

>g1406.t5 Gene=g1406 Length=97
MGWLLCKKHPDVKKFGARVSMADLEADPIIMFQHRHYLKLMLFFSLILPVFIPWYFWGES
FWASFLIAGVLRYITSLHITWLINSAAHTYGMKPFDK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g1406.t5 PANTHER PTHR11351 ACYL-COA DESATURASE 1 97 1.2E-34
2 g1406.t5 PANTHER PTHR11351:SF73 ACYL-COA DESATURASE 1 97 1.2E-34
4 g1406.t5 PRINTS PR00075 Fatty acid desaturase family 1 signature 37 55 2.0E-12
3 g1406.t5 PRINTS PR00075 Fatty acid desaturase family 1 signature 70 91 2.0E-12
8 g1406.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 36 -
11 g1406.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 37 56 -
9 g1406.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 57 61 -
10 g1406.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 62 83 -
7 g1406.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 84 97 -
5 g1406.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 40 57 -
6 g1406.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 61 83 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed