General information for g14092.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like protein.
Parent gene
- The parent gene g14092 is located on chr_1: 34580505..34581493 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14092 | g14092.t1 | TTS | g14092.t1 | 34580462 | 34580462 |
| chr_1 | g14092 | g14092.t1 | isoform | g14092.t1 | 34580505 | 34581493 |
| chr_1 | g14092 | g14092.t1 | exon | g14092.t1.exon1 | 34580505 | 34581324 |
| chr_1 | g14092 | g14092.t1 | cds | g14092.t1.CDS1 | 34580505 | 34581324 |
| chr_1 | g14092 | g14092.t1 | exon | g14092.t1.exon2 | 34581384 | 34581493 |
| chr_1 | g14092 | g14092.t1 | cds | g14092.t1.CDS2 | 34581384 | 34581493 |
| chr_1 | g14092 | g14092.t1 | TSS | g14092.t1 | 34581520 | 34581520 |
Sequences
>g14092.t1 Gene=g14092 Length=930
ATGTTAAAAAGTAAAAATTTAATAAATTTAATAGTTTTAAGCAAGAGATGCTTCTCAGTT
AAACCAAAAAGTGAAATTTCAAATGCTCTTTATTGTGCAAATAATGTAAAGAAATTCGAT
TATGAGAATTTTTTGTGTACACTATTGATTGGAAATGAGGAGAAAAGGAGAAACGCATTC
GCTTTGAGAGCTCTAAATGTTGAACTTGCCAGAATACCATCAGTTGTGTCAGATAATAAA
ATTGCTTTAATGCGACTCAAATTTTGGGAAGATGCAATAAAAAAATTATTCAATAACAAA
AAATCTCAAAATATATCATTGCCAAAACATCCAGTTGTAGAAGAATTAGGTTTTATTATG
CAACAATCTAGTTTAACAAAGAGAAACTTTGATAGATTAATAAATGCAAGAAAGGCTGCT
AATTTAAATTTTGTTACAATGAAACAGATGGAGCAATATGCAGAAGAGACAGTGAGTTCT
CTTAATTATCTCTTATTAGAGACACTTGATTGTAAAAATGTCAATGCTGACCATGCAGCA
TCTCATTTGGGTAAAGCACAAGGAATATCAAATTTATTACGATCAATTTATTCATTAAGA
AGTTATCAACATTTACCCATTCCTCAAGAATTGTTAATCAAACATGGAATATCACAAGAG
AGATTTTATCGAAGTAAAGAAAATGATAAAGCAGTAGAAAACACAGTTTTTGATGTTGCA
ACACTTGCTCATCAACATTTAGAAAAATCTATAGCTTTGATGTCAAAAGTTCCAAAAGAA
GCTAAAATTTTATTTTTGCCAATGGTGTCAACTAAAAGATTTCTTGAGAAGCTAAGGAAA
GTAAATTTTAATTTGACTGATAAAAGTATTGGAAAAAGAGACAATTTACTACCATTAGTA
CTTTATTGGAACAAATTTAAAGGTCTGTGA
>g14092.t1 Gene=g14092 Length=309
MLKSKNLINLIVLSKRCFSVKPKSEISNALYCANNVKKFDYENFLCTLLIGNEEKRRNAF
ALRALNVELARIPSVVSDNKIALMRLKFWEDAIKKLFNNKKSQNISLPKHPVVEELGFIM
QQSSLTKRNFDRLINARKAANLNFVTMKQMEQYAEETVSSLNYLLLETLDCKNVNADHAA
SHLGKAQGISNLLRSIYSLRSYQHLPIPQELLIKHGISQERFYRSKENDKAVENTVFDVA
TLAHQHLEKSIALMSKVPKEAKILFLPMVSTKRFLEKLRKVNFNLTDKSIGKRDNLLPLV
LYWNKFKGL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14092.t1 | Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 20 | 285 | 4.4E-17 |
| 2 | g14092.t1 | PANTHER | PTHR21181:SF13 | NADH DEHYDROGENASE (UBIQUINONE) COMPLEX I, ASSEMBLY FACTOR 6 | 25 | 307 | 4.5E-88 |
| 3 | g14092.t1 | PANTHER | PTHR21181 | - | 25 | 307 | 4.5E-88 |
| 1 | g14092.t1 | Pfam | PF00494 | Squalene/phytoene synthase | 37 | 286 | 8.9E-44 |
| 7 | g14092.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 8 | g14092.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 9 | g14092.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 14 | - |
| 10 | g14092.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 19 | - |
| 6 | g14092.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 309 | - |
| 4 | g14092.t1 | SUPERFAMILY | SSF48576 | Terpenoid synthases | 31 | 300 | 2.59E-42 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K18163 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
