General information for g14092.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like protein.
Parent gene
- The parent gene g14092 is located on chr_1: 34580505..34581493 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14092 | g14092.t12 | TTS | g14092.t12 | 34580462 | 34580462 |
| chr_1 | g14092 | g14092.t12 | isoform | g14092.t12 | 34580479 | 34581309 |
| chr_1 | g14092 | g14092.t12 | exon | g14092.t12.exon1 | 34580479 | 34581309 |
| chr_1 | g14092 | g14092.t12 | cds | g14092.t12.CDS1 | 34580505 | 34581185 |
| chr_1 | g14092 | g14092.t12 | TSS | g14092.t12 | 34581520 | 34581520 |
Sequences
>g14092.t12 Gene=g14092 Length=831
GAATTTTTTGTGTACACTATTGATTGGAAATGAGGAGAAAAGGAGAAACGCATTCGCTTT
GAGAGCTCTAAATGTTGAACTTGCCAGAATACCATCAGTTGTGTCAGATAATAAAATTGC
TTTAATGCGACTCAAATTTTGGGAAGATGCAATAAAAAAATTATTCAATAACAAAAAATC
TCAAAATATATCATTGCCAAAACATCCAGTTGTAGAAGAATTAGGTTTTATTATGCAACA
ATCTAGTTTAACAAAGAGAAACTTTGATAGATTAATAAATGCAAGAAAGGCTGCTAATTT
AAATTTTGTTACAATGAAACAGATGGAGCAATATGCAGAAGAGACAGTGAGTTCTCTTAA
TTATCTCTTATTAGAGACACTTGATTGTAAAAATGTCAATGCTGACCATGCAGCATCTCA
TTTGGGTAAAGCACAAGGAATATCAAATTTATTACGATCAATTTATTCATTAAGAAGTTA
TCAACATTTACCCATTCCTCAAGAATTGTTAATCAAACATGGAATATCACAAGAGAGATT
TTATCGAAGTAAAGAAAATGATAAAGCAGTAGAAAACACAGTTTTTGATGTTGCAACACT
TGCTCATCAACATTTAGAAAAATCTATAGCTTTGATGTCAAAAGTTCCAAAAGAAGCTAA
AATTTTATTTTTGCCAATGGTGTCAACTAAAAGATTTCTTGAGAAGCTAAGGAAAGTAAA
TTTTAATTTGACTGATAAAAGTATTGGAAAAAGAGACAATTTACTACCATTAGTACTTTA
TTGGAACAAATTTAAAGGTCTGTGACAAATGTTATTGAAATAAAATTTTAC
>g14092.t12 Gene=g14092 Length=226
MRLKFWEDAIKKLFNNKKSQNISLPKHPVVEELGFIMQQSSLTKRNFDRLINARKAANLN
FVTMKQMEQYAEETVSSLNYLLLETLDCKNVNADHAASHLGKAQGISNLLRSIYSLRSYQ
HLPIPQELLIKHGISQERFYRSKENDKAVENTVFDVATLAHQHLEKSIALMSKVPKEAKI
LFLPMVSTKRFLEKLRKVNFNLTDKSIGKRDNLLPLVLYWNKFKGL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14092.t12 | Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 1 | 202 | 0 |
| 2 | g14092.t12 | PANTHER | PTHR21181:SF13 | NADH DEHYDROGENASE (UBIQUINONE) COMPLEX I, ASSEMBLY FACTOR 6 | 1 | 224 | 0 |
| 3 | g14092.t12 | PANTHER | PTHR21181 | - | 1 | 224 | 0 |
| 1 | g14092.t12 | Pfam | PF00494 | Squalene/phytoene synthase | 1 | 203 | 0 |
| 4 | g14092.t12 | SUPERFAMILY | SSF48576 | Terpenoid synthases | 1 | 218 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
