General information for g14120.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Carnitine O-palmitoyltransferase 1, liver isoform.
Parent gene
- The parent gene g14120 is located on chr_1: 34807828..34809740 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14120 | g14120.t12 | isoform | g14120.t12 | 34807828 | 34809740 |
| chr_1 | g14120 | g14120.t12 | exon | g14120.t12.exon1 | 34807828 | 34807887 |
| chr_1 | g14120 | g14120.t12 | cds | g14120.t12.CDS1 | 34807844 | 34807887 |
| chr_1 | g14120 | g14120.t12 | exon | g14120.t12.exon2 | 34808140 | 34808199 |
| chr_1 | g14120 | g14120.t12 | cds | g14120.t12.CDS2 | 34808140 | 34808199 |
| chr_1 | g14120 | g14120.t12 | exon | g14120.t12.exon3 | 34808406 | 34808544 |
| chr_1 | g14120 | g14120.t12 | cds | g14120.t12.CDS3 | 34808406 | 34808544 |
| chr_1 | g14120 | g14120.t12 | exon | g14120.t12.exon4 | 34808611 | 34809136 |
| chr_1 | g14120 | g14120.t12 | cds | g14120.t12.CDS4 | 34808611 | 34809136 |
| chr_1 | g14120 | g14120.t12 | exon | g14120.t12.exon5 | 34809200 | 34809740 |
| chr_1 | g14120 | g14120.t12 | cds | g14120.t12.CDS5 | 34809200 | 34809396 |
| chr_1 | g14120 | g14120.t12 | TTS | g14120.t12 | 34809736 | 34809736 |
| chr_1 | g14120 | g14120.t12 | TSS | g14120.t12 | NA | NA |
Sequences
>g14120.t12 Gene=g14120 Length=1326
GGCGGATGCACCAATAATGGCTCACATTTGGGAACATATTGTTCTTGAAGAGGCAAAACG
GGCTGATGCACCAGTGCTTGGCCACGTTTGGGAATGTGCTCTCGCTGATGATCATGAAGG
ATATGATGAAAATGGTAATACTCTAGGAAAAATTGAAGTTCTTCCACCAGTACCTACACG
ACTTTCGTGGGATTTCAATGACGAATCTTTAGTGAAGACAATTGATATGGCTTATGATGA
TGCACAGAGAATAATCAATGATGTTGATTTGAGAATCCTTGTACATGATGCATATGGCAA
AGGATTTATGAAAACATGTCGTTGTTCACCAGATGCTTTCATTCAAATGGCACTTCAACT
TGCTTATTATCGTGATTATGGAAAATTTTCACTCACATATGAAGCATCAATGACACGATT
GTTCAGAGAAGGTAGAACTGAGACAGTTCGTCCTTGTACAATTGAATCTGCAGCATGGGT
AAAGGCCATGGAAAATAAAGATGTTACAGCTACTGAAAGAGTGAAACTTTTATATGATGC
ATGCAAAAGACATCAGCAAGGATATCAAGATGCTATGTGTGGACGAGGAGTTGACCGTCA
TCTTTTCTGCCTCTATGTTGTTTCAAAATATTTGGAAGTTGATTCACCTTTCTTGAAAGA
AATCTTGAGTGAACCATGGAGACTTTCAACTTCACAAACACCTCATGGACAAACTCCGAA
AATGGATCCAAAGAAAAATCCACACTTTATTAGTGCTGGTGGCGGCTTTGGACCTGTCAG
CGTTGATGGTTATGGTGTTTCATACATAATCGCAGGCGAAGATTTAATATTTTTCCACAT
ATCCAGCCTTAAGAGCTGTAATGTCACAGATTCAGAGAGATTTGCACAGCAAATTTGTAA
AGCATTAACAGACATAAAGTTGCTATTTGAGCAATATAATCTAGAACAGAAGAAAATTCT
ACAGAATGGTACATCACATTAGGACTTTAATTTTAGATTCGCATTAATTGAATATCGTCT
AATCTAGTTATTTTTAATTATATACACATTCTACAATGTTACCAGAGATAAATTCAATGC
AATTTTTATCATCGTAATTGAAAATTTAAGACTCTTAATGTCTATTTTAAAAGAAAGGTA
AAAAGTTTGACAATGTTTGGATTGGGATAGAATTTTGGATGCAATTTAATGTAGAATGAA
AAAGTTTTTAGTACAATGTTGGAACAGATTAGCTTATGTAAATGCGATATGCAATTATCA
ATGCAAACGATATTTGTTTTAACTTTATTGTAAAATTTATATTAAATAAAACAATTAAAA
ATTAAA
>g14120.t12 Gene=g14120 Length=321
MAHIWEHIVLEEAKRADAPVLGHVWECALADDHEGYDENGNTLGKIEVLPPVPTRLSWDF
NDESLVKTIDMAYDDAQRIINDVDLRILVHDAYGKGFMKTCRCSPDAFIQMALQLAYYRD
YGKFSLTYEASMTRLFREGRTETVRPCTIESAAWVKAMENKDVTATERVKLLYDACKRHQ
QGYQDAMCGRGVDRHLFCLYVVSKYLEVDSPFLKEILSEPWRLSTSQTPHGQTPKMDPKK
NPHFISAGGGFGPVSVDGYGVSYIIAGEDLIFFHISSLKSCNVTDSERFAQQICKALTDI
KLLFEQYNLEQKKILQNGTSH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14120.t12 | Gene3D | G3DSA:3.30.559.40 | - | 60 | 311 | 0 |
| 2 | g14120.t12 | PANTHER | PTHR22589:SF31 | CARNITINE PALMITOYLTRANSFERASE I | 15 | 306 | 0 |
| 3 | g14120.t12 | PANTHER | PTHR22589 | CARNITINE O-ACYLTRANSFERASE | 15 | 306 | 0 |
| 1 | g14120.t12 | Pfam | PF00755 | Choline/Carnitine o-acyltransferase | 12 | 301 | 0 |
| 4 | g14120.t12 | SUPERFAMILY | SSF52777 | CoA-dependent acyltransferases | 82 | 308 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
