General information for g14133.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14133 is located on chr_1: 34848031..34849386 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14133 | g14133.t16 | TTS | g14133.t16 | 34847948 | 34847948 |
| chr_1 | g14133 | g14133.t16 | isoform | g14133.t16 | 34848031 | 34849287 |
| chr_1 | g14133 | g14133.t16 | exon | g14133.t16.exon1 | 34848031 | 34848342 |
| chr_1 | g14133 | g14133.t16 | cds | g14133.t16.CDS1 | 34848031 | 34848333 |
| chr_1 | g14133 | g14133.t16 | exon | g14133.t16.exon2 | 34848399 | 34848633 |
| chr_1 | g14133 | g14133.t16 | exon | g14133.t16.exon3 | 34848823 | 34849072 |
| chr_1 | g14133 | g14133.t16 | exon | g14133.t16.exon4 | 34849279 | 34849287 |
| chr_1 | g14133 | g14133.t16 | TSS | g14133.t16 | 34849310 | 34849310 |
Sequences
>g14133.t16 Gene=g14133 Length=806
GCATTAAACGTTTAATCGTTGCTCTATAAAATAACGTACAATGTCGGGAGGACTTGATGT
ACTCGCTTTGCGCGATTCAGATGTAACAAAAATGCTTGCAGCAACTGCTCATCTCGGTTC
AGAGCATGTTAATTTCCAAATGGAACAATATGTTTTTAAGAGACGCTCTGATGGTGCCCA
TATTATTAACTTGGGACGAACATGGGAGAAGCTTTTGTTGGCTGCTCGTGCGATTGCTGC
TATTGAACATCCACAAGAGATCTATGCTATCTCATCACGAGCTTATGGACAGCGTGCTGT
CTTGAAATTTGCTCATTATACTGGAGCTACACCAATTGCTGGCCGTTTCACTCCTGGTGC
ATTCACCAATCAGCAACAAACAACTTTCCGTGAACCACGTCTATTGATTGTTACTGACCC
ATTGTCAGATCATCAGCCAGTCACTGAAGCTTCATATGTCAATATTCCTGTCATTGCTTT
TTGCAATACTGACAATTGGTTTAATGTGGTGGCTATTGGCACGTGAAGTTTTACGTCTCC
GTGGTCAAATTCCACGTGAACAACCATGGGAAGTTATGGTTGATTTGTTCTTCTATCGTG
ACCCAGAGGAAGCTGAAAAGGAAGAGCAAGCCGCCAAGGAAGTTTTGCCAGTTAAAGATT
ACGCTGAAGATATTGCTGAAGATCCAACTTATCCAGATGATCCATCAGGCGCAATTATTC
CTACACCAGCAGTTGCAACAGAAGATTGGAATGAAGACGAAACTGTTGTGCAATCAGAAT
GGGGTGGTGCCAACTCTGGCTTCTAA
>g14133.t16 Gene=g14133 Length=100
MWWLLAREVLRLRGQIPREQPWEVMVDLFFYRDPEEAEKEEQAAKEVLPVKDYAEDIAED
PTYPDDPSGAIIPTPAVATEDWNEDETVVQSEWGGANSGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g14133.t16 | Gene3D | G3DSA:3.40.50.10490 | - | 1 | 47 | 0 |
| 2 | g14133.t16 | PANTHER | PTHR11489 | 40S RIBOSOMAL PROTEIN SA | 1 | 93 | 0 |
| 3 | g14133.t16 | PANTHER | PTHR11489:SF9 | 40S RIBOSOMAL PROTEIN SA | 1 | 93 | 0 |
| 1 | g14133.t16 | Pfam | PF16122 | 40S ribosomal protein SA C-terminus | 29 | 90 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006412 | translation | BP |
| GO:0003735 | structural constituent of ribosome | MF |
| GO:0015935 | small ribosomal subunit | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
